RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 MED12Q93074 2177 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 FAM183AA6NL82 134 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 KNCNA6PVL3 124 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 FADS1O60427 444 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 OR2B3O76000 313 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 S1PR2O95136 353 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 LYPLA2O95372 231 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 SERPINA1P01009 418 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 TNNC2P02585 160 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 STATHP02808 62 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 TYMSP04818 313 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 IL6P05231 212 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 OR4E1P0C645 316 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 UCHL3P15374 230 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 ALOX5APP20292 161 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 BLVRBP30043 206 aaPredicted RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 DDTP30046 118 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 CLDN12P56749 244 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 GTF2BQ00403 316 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 AESQ08117 197 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 OR2F1Q13607 317 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 EBPQ15125 230 aaKnown RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 OR8G1Q15617 311 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 ACSBG2Q5FVE4 666 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 C6orf52Q5T4I8 152 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 HIST2H3PS2Q5TEC6 136 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 TMED4Q7Z7H5 227 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 AKAP14Q86UN6 197 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 GID4Q8IVV7 300 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 GPR32P1Q8NGA4 272 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 AP3S1Q92572 193 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 PRRT1Q99946 306 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 TAPBPLQ9BX59 468 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 CDCA4Q9BXL8 241 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 EBPLQ9BY08 206 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 SLC19A3Q9BZV2 496 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 ALX4Q9H161 411 aaPredicted RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 MAP1LC3AQ9H492 121 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 PAQR5Q9NXK6 330 aaPredicted RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 PSORS1C2Q9UIG4 136 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 POLR1DQ9Y2S0 133 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 LSM5Q9Y4Y9 91 aaKnown RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 DNAH1Q9P2D7 4330 aa1.33□□□□□ -2.2
CD44-233ENST00000531141 NYNRINQ9P2P1 1898 aaKnown RBP1.33□□□□□ -2.2
CD44-233ENST00000531141 DOCK10Q96BY6 2186 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 DNAJC13O75165 2243 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 DSCAMO60469 2012 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 HEATR5AQ86XA9 2040 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 TRAV17A0A0B4J275 112 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 LCE6AA0A183 80 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 TEX50A0A1B0GTY4 177 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 LOC102725191A0A1B0GVB3 256 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 PGRMC1O00264 195 aaKnown RBP1.32□□□□□ -2.2
CD44-233ENST00000531141 UBFD1O14562 309 aaKnown RBP1.32□□□□□ -2.2
CD44-233ENST00000531141 LTAP01374 205 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 RPSAP08865 295 aaKnown RBP1.32□□□□□ -2.2
CD44-233ENST00000531141 CXCL8P10145 99 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 SPNP16150 400 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 RPL12P30050 165 aaKnown RBP1.32□□□□□ -2.2
CD44-233ENST00000531141 AGTR1P30556 359 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 INPP1P49441 399 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 MP68P56378 58 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 RAB5BP61020 215 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 RANP62826 216 aaKnown RBP1.32□□□□□ -2.2
CD44-233ENST00000531141 EDDM3AQ14507 147 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 POU6F1Q14863 301 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 BATFQ16520 125 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 C4orf26Q17RF5 130 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 SCGB1D4Q6XE38 83 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 Q6ZRU5 148 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 CLEC20AQ6ZU45 233 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 TMEM86AQ8N2M4 240 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 LRRC25Q8N386 305 aaPredicted RBP1.32□□□□□ -2.2
CD44-233ENST00000531141 MUC15Q8N387 334 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 PXT1Q8NFP0 134 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 OR2D3Q8NGH3 330 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 OR5C1Q8NGR4 320 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 JOSD2Q8TAC2 188 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 EEF1AKMT1Q8WVE0 214 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 CYGBQ8WWM9 190 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 PPCDCQ96CD2 204 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 CCL19Q99731 98 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 PRSS27Q9BQR3 290 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 LXNQ9BS40 222 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 TTTY12Q9BZ98 90 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 MS4A6AQ9H2W1 248 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 FBXL15Q9H469 300 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 DMAC2Q9NW81 257 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 VPS29Q9UBQ0 182 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 PLCE1Q9P212 2302 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 CR1P17927 2039 aa1.32□□□□□ -2.2
CD44-233ENST00000531141 LYSTQ99698 3801 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 ALPK2Q86TB3 2170 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 MUC4Q99102 2169 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 DYNC2H1Q8NCM8 4307 aaKnown RBP1.31□□□□□ -2.2
CD44-233ENST00000531141 TCHHQ07283 1943 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 YLPM1P49750 1951 aaKnown RBP1.31□□□□□ -2.2
CD44-233ENST00000531141 FAM92AA1XBS5 289 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 METTL15A6NJ78 407 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms