RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PLEKHA3Q9HB20 300 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 NBASA2RRP1 2371 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 APC2O95996 2303 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 TRAV8-6A0A0B4J262 113 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 SAP30O75446 220 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 PSG9Q00887 426 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 COX19Q49B96 90 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 SGK494Q96LW2 274 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 CCL13Q99616 98 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 TMEM70Q9BUB7 260 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 DSCAMO60469 2012 aa11.55□□□□□ -0.56
USP48-213ENST00000529637 ZNF474Q6S9Z5 364 aaPredicted RBP11.54□□□□□ -0.56
USP48-213ENST00000529637 SEM1Q6ZVN7 128 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 SNRNP40Q96DI7 357 aaKnown RBP11.54□□□□□ -0.56
USP48-213ENST00000529637 SH3BGRL2Q9UJC5 107 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 ANKRD11Q6UB99 2663 aaPredicted RBP11.54□□□□□ -0.56
USP48-213ENST00000529637 ABCA1O95477 2261 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 A0A087X0K7 114 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 RIPPLY3P57055 190 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 TNFAIP6P98066 277 aaPredicted RBP11.54□□□□□ -0.56
USP48-213ENST00000529637 DEFB125Q8N687 156 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 GAGE12BA1L429 117 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 SAA2P0DJI9 122 aaPredicted RBP11.54□□□□□ -0.56
USP48-213ENST00000529637 LOXL3P58215 753 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 PMCHL2Q9BQD1 86 aa11.54□□□□□ -0.56
USP48-213ENST00000529637 H0Y8G0 127 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 FAM27E3Q08E93 113 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 CT45A1Q5HYN5 189 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 CT45A3Q8NHU0 189 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 NUDT11Q96G61 164 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 TMEM167BQ9NRX6 74 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 ZNRD1Q9P1U0 126 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 SNAI2O43623 268 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 FAM216BQ8N7L0 139 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 RND1Q92730 232 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 MBD6Q96DN6 1003 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 SAP30LQ9HAJ7 183 aa11.53□□□□□ -0.56
USP48-213ENST00000529637 GLRXP35754 106 aa11.52□□□□□ -0.56
USP48-213ENST00000529637 RAB31Q13636 194 aa11.52□□□□□ -0.56
USP48-213ENST00000529637 HIGD1CA8MV81 97 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 CCL8P80075 99 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 KLF5Q13887 457 aaPredicted RBP11.52□□□□□ -0.57
USP48-213ENST00000529637 IGFL2Q6UWQ7 119 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 OR9G1Q8NH87 305 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 RNF7Q9UBF6 113 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 SLC25A10Q9UBX3 287 aaPredicted RBP11.52□□□□□ -0.57
USP48-213ENST00000529637 DYSFO75923 2080 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 ZNF138P52744 262 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 TIMM23BQ5SRD1 257 aa11.52□□□□□ -0.57
USP48-213ENST00000529637 ZCCHC24Q8N2G6 241 aaKnown RBP11.52□□□□□ -0.57
USP48-213ENST00000529637 FAM90A1Q86YD7 464 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 WIPF2Q8TF74 440 aaPredicted RBP11.51□□□□□ -0.57
USP48-213ENST00000529637 MEGF9Q9H1U4 602 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 IGHV1-24A0A0C4DH33 117 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 TMEM238C9JI98 176 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 SYS1-DBNDD2H3BUS1 97 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 PYYP10082 97 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 SLC25A34Q6PIV7 304 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 PIP4P1Q86T03 277 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 WFDC8Q8IUA0 241 aa11.51□□□□□ -0.57
USP48-213ENST00000529637 KBTBD11-OT1A0A1B0GTJ5 212 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 C15orf61A6NNL5 157 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 F2RL2O00254 374 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 TCF24Q7RTU0 167 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 TIMM8BQ9Y5J9 83 aaPredicted RBP11.5□□□□□ -0.57
USP48-213ENST00000529637 MBD3L4A6NDZ8 208 aaPredicted RBP11.5□□□□□ -0.57
USP48-213ENST00000529637 MBD3L3A6NE82 208 aaPredicted RBP11.5□□□□□ -0.57
USP48-213ENST00000529637 MBD3L5A6NJ08 208 aaPredicted RBP11.5□□□□□ -0.57
USP48-213ENST00000529637 KIR2DS2P43631 304 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 HSPE1P61604 102 aaKnown RBP11.5□□□□□ -0.57
USP48-213ENST00000529637 C17orf58Q2M2W7 97 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 MBD3L2Q8NHZ7 208 aaPredicted RBP11.5□□□□□ -0.57
USP48-213ENST00000529637 ST20Q9HBF5 79 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 ZNF835Q9Y2P0 537 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 OR51B2Q9Y5P1 312 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 ZNF318Q5VUA4 2279 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 FAM215AQ9Y5M1 114 aa11.5□□□□□ -0.57
USP48-213ENST00000529637 TRGV8A0A0C4DH27 118 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 J3QR06 171 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 SSX8Q7RTT4 187 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 LHFPL4Q7Z7J7 247 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 SLC25A33Q9BSK2 321 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 CEP295Q9C0D2 2601 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 COMMD5Q9GZQ3 224 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 RAB9BQ9NP90 201 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 FAM90A9PA6NNJ1 464 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 REG1BP48304 166 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 GNG5P63218 68 aa11.49□□□□□ -0.57
USP48-213ENST00000529637 CRXO43186 299 aaPredicted RBP11.48□□□□□ -0.57
USP48-213ENST00000529637 UBE2L3P68036 154 aaKnown RBP11.48□□□□□ -0.57
USP48-213ENST00000529637 C1orf185Q5T7R7 199 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 NAA38Q9BRA0 125 aaKnown RBP11.48□□□□□ -0.57
USP48-213ENST00000529637 AMMECR1Q9Y4X0 333 aaPredicted RBP11.48□□□□□ -0.57
USP48-213ENST00000529637 PLXNB1O43157 2135 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 A0A1W2PRE2 83 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 OR2J3O76001 311 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 IGHV1-46P01743 117 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 C22orf34Q6ZV56 151 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 FAM167A-AS1Q96KT0 104 aa11.48□□□□□ -0.57
USP48-213ENST00000529637 SLC25A2Q9BXI2 301 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms