RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ERG28Q9UKR5 140 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 CFAP46Q8IYW2 2715 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 SMG1Q96Q15 3661 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 MYLKQ15746 1914 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 UNC13CQ8NB66 2214 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 ZFC3H1O60293 1989 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 AHCTF1Q8WYP5 2266 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 TMED7-TICAM2A0A0A6YYA0 188 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 TRAV4A0A0B4J268 109 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 A0A0J9YY10 115 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 LOC102725191A0A1B0GVB3 256 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 A0A1B0GX78 115 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 RIIAD1A6NNX1 92 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 H3BSA7 217 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 M0R1X1 148 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 COX7A2P2O60397 106 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 OR1I1O60431 355 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 IGHV3-23P01764 117 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 BGLAPP02818 100 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 SOD3P08294 240 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 PSG2P11465 335 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 EVI2AP22794 236 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 IL3RAP26951 378 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 OR10J1P30954 320 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 ATP5G3P48201 142 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 EVX1P49640 407 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 PSMB3P49720 205 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 TDGF1P3P51864 188 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 LOXL1Q08397 574 aaPredicted RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 FABP9Q0Z7S8 132 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 EIF3IQ13347 325 aaKnown RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 ENDOGQ14249 297 aaKnown RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 NEDD8Q15843 81 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 SSX1Q16384 188 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 SCGB2B2Q4G0G5 96 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 CASC10Q5T4H9 136 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 PRSS54Q6PEW0 395 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 ZNF773Q6PK81 442 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 MOB1BQ7L9L4 216 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 LINC00596Q86U02 117 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 NUP35Q8NFH5 326 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 OR13C8Q8NGS7 320 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 OR2T27Q8NH04 317 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 OR52P1PQ8NH57 321 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 TWIST2Q8WVJ9 160 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 SLC7A6Q92536 515 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 ARL11Q969Q4 196 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 ADAT3Q96EY9 351 aaPredicted RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 PDCD10Q9BUL8 212 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 LINC00470Q9BZP3 86 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 PARP12Q9H0J9 701 aaKnown RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 IFI27L2Q9H2X8 130 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 TMEM38BQ9NVV0 291 aa3.35□□□□□ -1.87
CD44-220ENST00000525688 DHCR7Q9UBM7 475 aaKnown RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 FASNP49327 2511 aaKnown RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 URB1O60287 2271 aaKnown RBP3.35□□□□□ -1.87
CD44-220ENST00000525688 TRBV19A0A075B6N1 114 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 IGHV5-10-1A0A0J9YXX1 117 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 DUXBA0A1W2PPF3 345 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 KRTAP4-16G5E9R7 235 aaPredicted RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 DNASE2O00115 360 aaPredicted RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 MRASO14807 208 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 GNG7O60262 68 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 APOMO95445 188 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 CCL4P13236 92 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 MUC1P15941 1255 aaPredicted RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 PPP1CCP36873 323 aaKnown RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 RPL35P42766 123 aaKnown RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 TAS2R30P59541 319 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 HERVK_113P63121 156 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 MRPS10P82664 201 aaKnown RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 HIST1H1AQ02539 215 aaPredicted RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 LINC00303Q3SY05 128 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 OCIAD2Q56VL3 154 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 SPINK14Q6IE38 97 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 SCIMPQ6UWF3 145 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 IL34Q6ZMJ4 242 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 BAP18Q8IXM2 172 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 ZNF664Q8N3J9 261 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 LINC00612Q8N6U2 182 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 YIPF7Q8N8F6 280 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 TMEM229BQ8NBD8 167 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 ORAOV1Q8WV07 137 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 FAM104AQ969W3 186 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 IGF2BP2-AS1Q96M15 143 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 C18orf15Q96N68 181 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 YPEL4Q96NS1 127 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 NDFIP1Q9BT67 221 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 ZNF436Q9C0F3 470 aaPredicted RBP3.34□□□□□ -1.87
CD44-220ENST00000525688 OR2H1Q9GZK4 316 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 YIPF3Q9GZM5 350 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 OR2D2Q9H210 308 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 NIT2Q9NQR4 276 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 LAMTOR2Q9Y2Q5 125 aa3.34□□□□□ -1.87
CD44-220ENST00000525688 PIKFYVEQ9Y2I7 2098 aa3.34□□□□□ -1.88
CD44-220ENST00000525688 PIEZO2Q9H5I5 2752 aa3.34□□□□□ -1.88
CD44-220ENST00000525688 PRRC2CQ9Y520 2896 aaKnown RBP3.33□□□□□ -1.88
CD44-220ENST00000525688 PTPRQQ9UMZ3 2332 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 UQCRHLA0A096LP55 91 aa3.33□□□□□ -1.88
CD44-220ENST00000525688 IGHV1-69-2A0A0G2JMI3 117 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms