RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ARHGEF11O15085 1522 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 EP300Q09472 2414 aaPredicted RBP0.83□□□□□ -2.28
CD44-215ENST00000525241 ACACBO00763 2458 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 ROS1P08922 2347 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 PCNX1Q96RV3 2341 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 MXRA5Q9NR99 2828 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 COL24A1Q17RW2 1714 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 TRBV20OR9-2A0A075B6H5 130 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 IGKV2D-26A0A0A0MRZ7 120 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 TRBV10-2A0A0K0K1G8 114 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 OR4C46A6NHA9 309 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 BUB1B-PAK6H3BSN5 160 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 PSMD12O00232 456 aaPredicted RBP0.82□□□□□ -2.28
CD44-215ENST00000525241 OR2J2O76002 312 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 ZNF682O95780 498 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 PRM2P04554 102 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 S100A7P31151 101 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 ANP32AP39687 249 aaKnown RBP0.82□□□□□ -2.28
CD44-215ENST00000525241 AP3S2P59780 193 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 PSME3P61289 254 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 SUPT4H1P63272 117 aaKnown RBP0.82□□□□□ -2.28
CD44-215ENST00000525241 EDDM3AQ14507 147 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 C12orf74Q32Q52 190 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 TMEM97Q5BJF2 176 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 IBA57Q5T440 356 aaKnown RBP0.82□□□□□ -2.28
CD44-215ENST00000525241 SPOPLQ6IQ16 392 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 ZNF439Q8NDP4 499 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 TERB2Q8NHR7 220 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 PFN4Q8NHR9 129 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 ITFG2Q969R8 447 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 RNF122Q9H9V4 155 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 MCM3APO60318 1980 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 SCN8AQ9UQD0 1980 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 EP400Q96L91 3159 aa0.82□□□□□ -2.28
CD44-215ENST00000525241 POLEQ07864 2286 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 CEP164Q9UPV0 1460 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 SCN3AQ9NY46 2000 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 STAB2Q8WWQ8 2551 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 EXOC1LA0A1B0GW35 172 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 SHBGP04278 402 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 CST2P09228 141 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 SULT1A3P0DMM9 295 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 SULT1A4P0DMN0 295 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 SMIM10L2AP0DMW4 78 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 SMIM10L2BP0DMW5 78 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 GRK1Q15835 563 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 KCNJ8Q15842 424 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 C10orf55Q5SWW7 151 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 AADACL3Q5VUY0 350 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 DHFR2Q86XF0 187 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 H1FXQ92522 213 aaKnown RBP0.81□□□□□ -2.28
CD44-215ENST00000525241 PPP1R14BQ96C90 147 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 REG4Q9BYZ8 158 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 C11orf68Q9H3H3 251 aaKnown RBP0.81□□□□□ -2.28
CD44-215ENST00000525241 PRTFDC1Q9NRG1 225 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 GLTPQ9NZD2 209 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 PRELID3BQ9Y3B1 194 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 C22orf24Q9Y442 160 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 TMEM56-RWDD3S4R434 201 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 MUC3AQ02505 3323 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 TLN2Q9Y4G6 2542 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 UTRNP46939 3433 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 ZFHX3Q15911 3703 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 CENPFP49454 3210 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 NBEAQ8NFP9 2946 aa0.81□□□□□ -2.28
CD44-215ENST00000525241 MED14O60244 1454 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 TECTAO75443 2155 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 hADV38S2A0JD32 116 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 DPRXA6NFQ7 191 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 FAM159BA6NKW6 160 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 FABP5P3A8MUU1 101 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 NOS1APO75052 506 aaPredicted RBP0.8□□□□□ -2.28
CD44-215ENST00000525241 TNNC2P02585 160 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BOP23527 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HSD11B1P28845 292 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BBP33778 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BDP58876 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 CDC42P60953 191 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BCP62807 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H3AP68431 136 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 H3F3AP84243 136 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST2H2BEQ16778 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.8□□□□□ -2.28
CD44-215ENST00000525241 OR6V1Q8N148 313 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 OR5B17Q8NGF7 314 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BHQ93079 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 TOMM6Q96B49 74 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BNQ99877 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 HIST1H2BMQ99879 126 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 TMEM147Q9BVK8 224 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 RNASE7Q9H1E1 156 aaKnown RBP0.8□□□□□ -2.28
CD44-215ENST00000525241 BAIAP2Q9UQB8 552 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 PIEZO2Q9H5I5 2752 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 CELSR1Q9NYQ6 3014 aa0.8□□□□□ -2.28
CD44-215ENST00000525241 CEP290O15078 2479 aa0.79□□□□□ -2.28
CD44-215ENST00000525241 IRGMA1A4Y4 181 aa0.79□□□□□ -2.28
CD44-215ENST00000525241 GGT3PA6NGU5 568 aa0.79□□□□□ -2.28
CD44-215ENST00000525241 SDCBPO00560 298 aaPredicted RBP0.79□□□□□ -2.28
CD44-215ENST00000525241 SLC22A1O15245 554 aa0.79□□□□□ -2.28
CD44-215ENST00000525241 RNASE3P12724 160 aaKnown RBP0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms