RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 EDA2RQ9HAV5 297 aa15.55■□□□□ 0.08
VPS28-203ENST00000524521 CENPXA8MT69 81 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 PITX3O75364 302 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 NDUFB6O95139 128 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 CD5P06127 495 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 HOXB5P09067 269 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 IGLC1P0CG04 106 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 LYL1P12980 280 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 OR10J1P30954 320 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 PAFAH1B2P68402 229 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 OR1S2Q8NGQ3 325 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 NPIPB3Q92617 1050 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 ACY3Q96HD9 319 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 METTL26Q96S19 204 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 FLVCR2Q9UPI3 526 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 TMED3Q9Y3Q3 217 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 NBEAL2Q6ZNJ1 2754 aa15.54■□□□□ 0.08
VPS28-203ENST00000524521 DFFBO76075 338 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 IFNA4P05014 189 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 SLC25A6P12236 298 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 IL7P13232 177 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 UBE2MP61081 183 aaKnown RBP15.53■□□□□ 0.08
VPS28-203ENST00000524521 RPL11P62913 178 aaKnown RBP15.53■□□□□ 0.08
VPS28-203ENST00000524521 WFDC3Q8IUB2 231 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 Q8WTZ3 238 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 TMEM231Q9H6L2 316 aa15.53■□□□□ 0.08
VPS28-203ENST00000524521 A0A1W2PS18 150 aa15.52■□□□□ 0.08
VPS28-203ENST00000524521 CMC4P56277 68 aaPredicted RBP15.52■□□□□ 0.08
VPS28-203ENST00000524521 ATP5IP56385 69 aaPredicted RBP15.52■□□□□ 0.08
VPS28-203ENST00000524521 YPEL3P61236 119 aaPredicted RBP15.52■□□□□ 0.08
VPS28-203ENST00000524521 CASC10Q5T4H9 136 aa15.52■□□□□ 0.08
VPS28-203ENST00000524521 C9orf170A2RU37 121 aa15.51■□□□□ 0.07
VPS28-203ENST00000524521 DNASE2O00115 360 aaPredicted RBP15.51■□□□□ 0.07
VPS28-203ENST00000524521 IAPPP10997 89 aa15.51■□□□□ 0.07
VPS28-203ENST00000524521 CRYBB3P26998 211 aa15.51■□□□□ 0.07
VPS28-203ENST00000524521 GGNBP1Q5YKI7 109 aa15.51■□□□□ 0.07
VPS28-203ENST00000524521 APRG1Q8IVJ8 170 aa15.51■□□□□ 0.07
VPS28-203ENST00000524521 NARS2Q96I59 477 aaKnown RBP15.51■□□□□ 0.07
VPS28-203ENST00000524521 C7orf50Q9BRJ6 194 aaKnown RBP15.51■□□□□ 0.07
VPS28-203ENST00000524521 FAM90A26D6RGX4 464 aa15.5■□□□□ 0.07
VPS28-203ENST00000524521 MED6O75586 246 aa15.5■□□□□ 0.07
VPS28-203ENST00000524521 APOC4P55056 127 aa15.5■□□□□ 0.07
VPS28-203ENST00000524521 MAGT1Q9H0U3 335 aa15.5■□□□□ 0.07
VPS28-203ENST00000524521 MS4A6AQ9H2W1 248 aa15.5■□□□□ 0.07
VPS28-203ENST00000524521 PAIP2BQ9ULR5 123 aaKnown RBP15.5■□□□□ 0.07
VPS28-203ENST00000524521 OR4E1P0C645 316 aa15.49■□□□□ 0.07
VPS28-203ENST00000524521 RPL35AP18077 110 aaKnown RBP15.49■□□□□ 0.07
VPS28-203ENST00000524521 BTCP35070 178 aa15.49■□□□□ 0.07
VPS28-203ENST00000524521 ZNF124Q15973 351 aa15.49■□□□□ 0.07
VPS28-203ENST00000524521 ZFAND6Q6FIF0 208 aa15.49■□□□□ 0.07
VPS28-203ENST00000524521 ADAP1O75689 374 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 RD3LP0DJH9 198 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 GPX4P36969 197 aaPredicted RBP15.48■□□□□ 0.07
VPS28-203ENST00000524521 P2RY1P47900 373 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 RAB11AP62491 216 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 COQ8AQ8NI60 647 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 GRAMD2BQ96HH9 432 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 OVOL2Q9BRP0 275 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 MAP6D1Q9H9H5 199 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 RABAC1Q9UI14 185 aa15.48■□□□□ 0.07
VPS28-203ENST00000524521 WRBO00258 174 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 SYNGR2O43760 224 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 IL4P05112 153 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 HNRNPCP07910 306 aaKnown RBP eCLIP15.47■□□□□ 0.07
VPS28-203ENST00000524521 ANXA7P20073 488 aaKnown RBP15.47■□□□□ 0.07
VPS28-203ENST00000524521 DHRS2Q13268 280 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 GAMTQ14353 236 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 C4orf46Q504U0 113 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 LYG2Q86SG7 212 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 STPG3Q8N7X2 389 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 SLC35E1Q96K37 410 aa15.47■□□□□ 0.07
VPS28-203ENST00000524521 CIB3Q96Q77 187 aaPredicted RBP15.47■□□□□ 0.07
VPS28-203ENST00000524521 UBE2CO00762 179 aa15.46■□□□□ 0.07
VPS28-203ENST00000524521 PLA2G10O15496 165 aa15.46■□□□□ 0.07
VPS28-203ENST00000524521 TOMM40O96008 361 aa15.46■□□□□ 0.07
VPS28-203ENST00000524521 RPP30P78346 268 aaKnown RBP15.46■□□□□ 0.07
VPS28-203ENST00000524521 STXBP6Q8NFX7 210 aa15.46■□□□□ 0.07
VPS28-203ENST00000524521 U3KQE9 123 aa15.46■□□□□ 0.07
VPS28-203ENST00000524521 TRAV2A0A0B4J234 112 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 KIR2DL5BA0A0G2JN68 375 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 KIR2DL5BA0A0G2JPC4 375 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 ZFP92A6NM28 416 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 IFNA21P01568 189 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 PSG1P11464 419 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 USF2Q15853 346 aaPredicted RBP15.45■□□□□ 0.06
VPS28-203ENST00000524521 CNPY1Q3B7I2 92 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 KIR2DL5AQ8N109 375 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 KIR2DL5BQ8NHK3 375 aa15.45■□□□□ 0.06
VPS28-203ENST00000524521 MPTX1A8MV57 137 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 LYRM1O43325 122 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 SPRY2O43597 315 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 DEFB131AP59861 70 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 DEFB135Q30KP9 77 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 Q6ZWC4 215 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 FAM24BQ8N5W8 94 aa15.44■□□□□ 0.06
VPS28-203ENST00000524521 EIF2B2P49770 351 aaKnown RBP15.43■□□□□ 0.06
VPS28-203ENST00000524521 SPANXN5Q5MJ07 72 aa15.43■□□□□ 0.06
VPS28-203ENST00000524521 LEMD1Q68G75 181 aa15.43■□□□□ 0.06
VPS28-203ENST00000524521 C16orf54Q6UWD8 224 aa15.43■□□□□ 0.06
VPS28-203ENST00000524521 OR51G1Q8NGK1 321 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms