RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 GAGE12GP0CL81 117 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 GAGE12IP0CL82 117 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 PYYP10082 97 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 SRFP11831 508 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 ERVK-16P61578 105 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 GAGE4Q13068 117 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 WFDC2Q14508 124 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 RNPS1Q15287 305 aaKnown RBP8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 HES7Q9BYE0 225 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 TIMM9Q9Y5J7 89 aa8.33□□□□□ -1.08
PDGFRB-207ENST00000520579 TMEM265A0A087WTH1 108 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 TMEM97Q5BJF2 176 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 SPINK14Q6IE38 97 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 ASCL4Q6XD76 172 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 SYT8Q8NBV8 401 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 ARPC1AQ92747 370 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 WDR83OSQ9Y284 106 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 MT-ATP8P03928 68 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 RHOBP62745 196 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 LEPROTL1O95214 131 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 DSCR4P56555 118 aaPredicted RBP8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 UBE2L3P68036 154 aaKnown RBP8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 KIR3DS1Q14943 382 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 TTC32Q5I0X7 151 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 ACP7Q6ZNF0 438 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 SPACA3Q8IXA5 215 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 SPAG8Q99932 426 aaPredicted RBP8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 TMEM70Q9BUB7 260 aa8.32□□□□□ -1.08
PDGFRB-207ENST00000520579 A0A1B0GWB2 263 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 TMPRSS2O15393 492 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 Q0VG73 95 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 ZFAND6Q6FIF0 208 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 SLC25A45Q8N413 288 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 DEFB108BQ8NET1 73 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 C20orf78Q9BR46 151 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 HCFC1P51610 2035 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 CCL4P13236 92 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 CCL7P80098 99 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 MRPS21P82921 87 aaKnown RBP8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 DCAF12Q5T6F0 453 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 SFXN3Q9BWM7 321 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 ZNF576Q9H609 170 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 PCNX2A6NKB5 2137 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 IGHV3OR15-7A0A075B7D8 119 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 HIGD1CA8MV81 97 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 GPR82Q96P67 336 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 REPIN1Q9BWE0 567 aaKnown RBP8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 TNFRSF19Q9NS68 423 aa8.31□□□□□ -1.08
PDGFRB-207ENST00000520579 TMEM189A5PLL7 270 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 PMS2P5A8MQ11 134 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 TNFRSF6BO95407 300 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 PPIFP30405 207 aaKnown RBP8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 CX3CL1P78423 397 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 GDF5OSQ5U4N7 250 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 UFSP1Q6NVU6 142 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 GNB1LQ9BYB4 327 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 ATG2AQ2TAZ0 1938 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 HLA-DQA1P01909 254 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 SAMD5Q5TGI4 173 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 OR13A1Q8NGR1 328 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 OR9G1Q8NH87 305 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 FLYWCH2Q96CP2 140 aaKnown RBP8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 FAM173AQ9BQD7 235 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 ZFHX4Q86UP3 3567 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 TRGV10A0A0A0MS01 117 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 IGHV1OR15-9A0A0B4J2B8 117 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 LINC00869P0C866 280 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 NMUP48645 174 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 NABP2Q9BQ15 211 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 ZNRD1Q9P1U0 126 aa8.3□□□□□ -1.08
PDGFRB-207ENST00000520579 TMSB15BA0A087X1C1 80 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 J3QR06 171 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 UTF1Q5T230 341 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 ZNF645Q8N7E2 425 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 RAX2Q96IS3 184 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 HES4Q9HCC6 221 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 DUSP13Q9UII6 198 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 SPINT2O43291 252 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 KLF7O75840 302 aaPredicted RBP8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 VDAC2P45880 294 aaPredicted RBP8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 SEC11AP67812 179 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 TEPPQ6URK8 271 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 FOXL2NBQ6ZUU3 175 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 RND1Q92730 232 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 PTH2Q96A98 100 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 KLF13Q9Y2Y9 288 aaPredicted RBP8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 GGTLC3B5MD39 225 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 CCDC179H3BU77 68 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 INSL3P51460 131 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 BRWD1-AS2P59051 145 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 MED13Q9UHV7 2174 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 EP300Q09472 2414 aaPredicted RBP8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 A0A1W2PPM0 123 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 PRSS29PA6NIE9 313 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 CD27P26842 260 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 EMP1P54849 157 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 FAM201AQ5SY85 155 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 MORN5Q5VZ52 161 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 SFTA2Q6UW10 78 aa8.29□□□□□ -1.08
PDGFRB-207ENST00000520579 NUP35Q8NFH5 326 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms