RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KCNK15Q9H427 330 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF286AQ9HBT8 521 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 WFDC1Q9HC57 220 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 AURKAIP1Q9NWT8 199 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-207ENST00000507401 IDI2-AS1Q9NZ38 188 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 HSPB7Q9UBY9 170 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 UQCR10Q9UDW1 63 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 ANXA10Q9UJ72 324 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 AMMECR1Q9Y4X0 333 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM56-RWDD3S4R434 201 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TGP01266 2768 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A18PA6NE21 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A16PA6NEW6 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A20PA6NIJ5 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A9PA6NNJ1 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A12PA8MX19 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A5PA8MXJ8 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 OR7C1O76099 320 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-207ENST00000507401 SCGB1D2O95969 90 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A15PP0C7V4 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A13PP0C7W8 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A14PP0C7W9 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A24PP0C7X0 464 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 FUT3P21217 361 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 OR3A4PP47883 348 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 RPL29P47914 159 aaKnown RBP6.38□□□□□ -1.39
SCN1A-207ENST00000507401 PSMB3P49720 205 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM50BP56557 158 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 RBM11P57052 281 aaKnown RBP6.38□□□□□ -1.39
SCN1A-207ENST00000507401 PIGPP57054 158 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 RBX1P62877 108 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 HBG1P69891 147 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 HBG2P69892 147 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 PIGYQ3MUY2 71 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 PLAC9Q5JTB6 97 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF705AQ6ZN79 300 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-207ENST00000507401 Q6ZS49 121 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 NDUFA11Q86Y39 141 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 C8orf31Q8N9H6 132 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF738Q8NE65 137 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 OR52M1Q8NGK5 317 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 OR13A1Q8NGR1 328 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 SMIM12Q96EX1 92 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 ARHGAP5-AS1Q96IT6 56 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 RNF2Q99496 336 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 SMIM7Q9BQ49 75 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 PECRQ9BY49 303 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 KRTAP17-1Q9BYP8 105 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 CALYQ9NYX4 217 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 SLC45A2Q9UMX9 530 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 PSG11Q9UQ72 335 aa6.38□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM30CPA0ZSE6 113 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A10PA6NDY2 464 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A7PA6NKC0 464 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 FAM90A23PA8MXZ1 464 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 PF4P02776 101 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 NPSP0C0P6 89 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 CTXN2P0C2S0 81 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 CD28P10747 220 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 VDAC1P21796 283 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 BLVRBP30043 206 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-207ENST00000507401 VDAC2P45880 294 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-207ENST00000507401 FHITP49789 147 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 RAB7AP51149 207 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 CEBPGP53567 150 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 HERV-K104P61576 105 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 MEF2BQ02080 365 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-207ENST00000507401 UBE2V1Q13404 147 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 OR5I1Q13606 314 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 KPRPQ5T749 579 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-207ENST00000507401 OR8G2PQ6IF36 304 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 TEX38Q6PEX7 206 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 LINC01551Q86U37 167 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 GAPTQ8N292 157 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 LINC00311Q8N616 119 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM252Q8N6L7 170 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 C11orf44Q8N8P7 122 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 WFDC9Q8NEX5 89 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 OR4F17Q8NGA8 305 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 OR5AU1Q8NGC0 362 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 PLPPR1Q8TBJ4 325 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 RPEQ96AT9 228 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 OR4F4Q96R69 305 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 TP53RKQ96S44 253 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 ATG101Q9BSB4 218 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 SLC25A33Q9BSK2 321 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM222Q9H0R3 208 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 SH3BGRL3Q9H299 93 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 RAB9BQ9NP90 201 aa6.37□□□□□ -1.39
SCN1A-207ENST00000507401 RCL1Q9Y2P8 373 aaKnown RBP6.37□□□□□ -1.39
SCN1A-207ENST00000507401 MRPS16Q9Y3D3 137 aaKnown RBP6.37□□□□□ -1.39
SCN1A-207ENST00000507401 A0A0A6YYD4 124 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 ZNF705FA8MVS1 300 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-207ENST00000507401 C15orf65H3BRN8 121 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 K7ERU9 68 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 HSPB6O14558 160 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 SOCS1O15524 211 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 PDE6DO43924 150 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 MT-ND6P03923 174 aa6.36□□□□□ -1.39
SCN1A-207ENST00000507401 AMY1AP04745 511 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 300.7 ms