RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, human

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-A-208	ENST00000496081	BCL6B	Q8N143	479 aa	Predicted RBP	12.89	□□□□□ -0.35
HLA-A-208	ENST00000496081	OR4X1	Q8NH49	305 aa		12.89	□□□□□ -0.35
HLA-A-208	ENST00000496081	TMEM37	Q8WXS4	190 aa		12.89	□□□□□ -0.35
HLA-A-208	ENST00000496081	GSX1	Q9H4S2	264 aa	Predicted RBP	12.89	□□□□□ -0.35
HLA-A-208	ENST00000496081	PSMB11	A5LHX3	300 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	FSHB	P01225	129 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	ARL14EPL	P0DKL9	152 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	CYB5R2	Q6BCY4	276 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	ATRAID	Q6UW56	229 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	IQCF2	Q8IXL9	164 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	GATAD1	Q8WUU5	269 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	TMUB1	Q9BVT8	246 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	C19orf24	Q9BVV8	132 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	VAX2	Q9UIW0	290 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	FUT9	Q9Y231	359 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	ITPR3	Q14573	2671 aa		12.88	□□□□□ -0.35
HLA-A-208	ENST00000496081	OR5G3	P0C626	314 aa		12.87	□□□□□ -0.35
HLA-A-208	ENST00000496081	DEFB112	Q30KQ8	113 aa		12.87	□□□□□ -0.35
HLA-A-208	ENST00000496081	UNQ5815/PRO19632	Q6UWF5	114 aa		12.87	□□□□□ -0.35
HLA-A-208	ENST00000496081	MIR17HG	Q75NE6	70 aa		12.87	□□□□□ -0.35
HLA-A-208	ENST00000496081	SVBP	Q8N300	66 aa		12.87	□□□□□ -0.35
HLA-A-208	ENST00000496081	CYSRT1	A8MQ03	144 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	CXorf1	O96002	111 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	IGLC1	P0CG04	106 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	PSMB3	P49720	205 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	ECSCR	Q19T08	205 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	SPNS3	Q6ZMD2	512 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	CIART	Q8N365	385 aa	Predicted RBP	12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	FAM110D	Q8TAY7	271 aa	Predicted RBP	12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	NANP	Q8TBE9	248 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	MANBAL	Q9NQG1	85 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	TEX15	Q9BXT5	2789 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	CCDC168	Q8NDH2	2452 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	CLN5	O75503	358 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	AKIRIN2	Q53H80	203 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	CYB561D1	Q8N8Q1	229 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	DNAJC4	Q9NNZ3	241 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	DOK5	Q9P104	306 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081	PITPNC1	Q9UKF7	332 aa		12.86	□□□□□ -0.35
HLA-A-208	ENST00000496081		G3V318	75 aa		12.85	□□□□□ -0.35
HLA-A-208	ENST00000496081	NDUFB8	O95169	186 aa		12.85	□□□□□ -0.35
HLA-A-208	ENST00000496081	PATE2	Q6UY27	113 aa		12.85	□□□□□ -0.35
HLA-A-208	ENST00000496081	TMEM68	Q96MH6	324 aa		12.85	□□□□□ -0.35
HLA-A-208	ENST00000496081	THYN1	Q9P016	225 aa		12.85	□□□□□ -0.35
HLA-A-208	ENST00000496081	COX7A2P2	O60397	106 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	PAGE4	O60829	102 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	OR2J3	O76001	311 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	CD81	P60033	236 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	MEF2B	Q02080	365 aa	Predicted RBP	12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	KLK9	Q2XQG4	91 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	SOHLH1	Q5JUK2	328 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	OR1L4	Q8NGR5	311 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	KLK9	Q9UKQ9	250 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081		S4R3C0	116 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081		M0QZK8	103 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	IGKV1-17	P01599	117 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	GCHFR	P30047	84 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	TAGLN2	P37802	199 aa	Known RBP	12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	CEBPG	P53567	150 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	TIGIT	Q495A1	244 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	MORN5	Q5VZ52	161 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	C10orf113	Q5VZT2	155 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	C9orf139	Q6ZV77	190 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	PFDN5	Q99471	154 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	RNF2	Q99496	336 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	FOXC2	Q99958	501 aa		12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	MRPL32	Q9BYC8	188 aa	Known RBP	12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	NKX6-2	Q9C056	277 aa	Predicted RBP	12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	TECR	Q9NZ01	308 aa	Known RBP	12.84	□□□□□ -0.35
HLA-A-208	ENST00000496081	SNAPIN	O95295	136 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	IGHV4-59	P01825	116 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	HIST1H1B	P16401	226 aa	Known RBP	12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	CRIP2	P52943	208 aa	Predicted RBP	12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	MFAP4	P55083	255 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	C9orf152	Q5JTZ5	239 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	C16orf82	Q7Z2V1	217 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	ZNF503	Q96F45	646 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	FBXL7	Q9UJT9	491 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	ZNF469	Q96JG9	3925 aa	Predicted RBP	12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	NOTCH2	Q04721	2471 aa		12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	SETX	Q7Z333	2677 aa	Known RBP	12.83	□□□□□ -0.36
HLA-A-208	ENST00000496081	ELOA3C	A0A087WX78	387 aa	Predicted RBP	12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081		F8W735	103 aa	Predicted RBP	12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	C8orf88	P0DMB2	117 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	PSG1	P11464	419 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	ORM2	P19652	201 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	IER3	P46695	156 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	NPBWR1	P48145	328 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	UBE2G2	P60604	165 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	C19orf54	Q5BKX5	351 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	ZNF48	Q96MX3	618 aa	Predicted RBP	12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	UHRF2	Q96PU4	802 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	C21orf62	Q9NYP8	219 aa		12.82	□□□□□ -0.36
HLA-A-208	ENST00000496081	TRBV9	A0A0B4J1U6	114 aa		12.81	□□□□□ -0.36
HLA-A-208	ENST00000496081	TRAV5	A0A0B4J249	113 aa		12.81	□□□□□ -0.36
HLA-A-208	ENST00000496081	TRAV41	A0A0B4J266	112 aa		12.81	□□□□□ -0.36
HLA-A-208	ENST00000496081	SMAD7	O15105	426 aa	Known RBP	12.81	□□□□□ -0.36
HLA-A-208	ENST00000496081	IGHG2	P01859	326 aa		12.81	□□□□□ -0.36
HLA-A-208	ENST00000496081	TAS2R45	P59539	299 aa		12.81	□□□□□ -0.36
HLA-A-208	ENST00000496081	PLP1	P60201	277 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms