RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SCN9AQ15858 1988 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 RALGAPA2Q2PPJ7 1873 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 IGKV1D-43A0A0B4J1Z2 117 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 A0A1W2PQD3 144 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 GGT3PA6NGU5 568 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 CDS2O95674 445 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 NPYP01303 97 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 PRM2P04554 102 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BOP23527 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 SERPINB1P30740 379 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BBP33778 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BDP58876 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 AP1S1P61966 158 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BCP62807 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST2H2BEQ16778 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.61□□□□□ -1.99
VPS13A-212ENST00000493341 AADACL3Q5VUY0 350 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 ZNF767PQ75MW2 155 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BHQ93079 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BNQ99877 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 HIST1H2BMQ99879 126 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 MED29Q9NX70 200 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 SCN10AQ9Y5Y9 1956 aa2.61□□□□□ -1.99
VPS13A-212ENST00000493341 SMIM10L2AP0DMW4 78 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 SMIM10L2BP0DMW5 78 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 GZMBP10144 247 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 PPIBP23284 216 aaKnown RBP2.6□□□□□ -1.99
VPS13A-212ENST00000493341 AKR1C1Q04828 323 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 IBA57Q5T440 356 aaKnown RBP2.6□□□□□ -1.99
VPS13A-212ENST00000493341 PRR9Q5T870 116 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 SMCR5Q8TEV8 140 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 ZHX1-C8orf76Q96EF9 292 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 TXNL4BQ9NX01 149 aaKnown RBP2.6□□□□□ -1.99
VPS13A-212ENST00000493341 TP73-AS1Q9UF72 201 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 HSPE1-MOB4S4R3N1 261 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 DOCK3Q8IZD9 2030 aa2.6□□□□□ -1.99
VPS13A-212ENST00000493341 SHANK1Q9Y566 2161 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 GNG14A0A1W2PPG7 69 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 RTL8CO15255 209 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 BPGMP07738 259 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 TFPTP0C1Z6 253 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 HLA-DMBP28068 263 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 CA5AP35218 305 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 XCL1P47992 114 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 TCTAP57738 103 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 RHOBP62745 196 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 GNG5P63218 68 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 RHEBQ15382 184 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-212ENST00000493341 LCE3EQ5T5B0 92 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 TOMM6Q96B49 74 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 PARVBQ9HBI1 364 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 MYH13Q9UKX3 1938 aa2.59□□□□□ -1.99
VPS13A-212ENST00000493341 IGHV3-15A0A0B4J1V0 119 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 G3V2T6 193 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 H3BPC8 53 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 C1QBP02746 253 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 RPSAP08865 295 aaKnown RBP2.59□□□□□ -2
VPS13A-212ENST00000493341 MEF2BQ02080 365 aaPredicted RBP2.59□□□□□ -2
VPS13A-212ENST00000493341 BAMBIQ13145 260 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 TSNQ15631 228 aaKnown RBP2.59□□□□□ -2
VPS13A-212ENST00000493341 IGFL1Q6UW32 110 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 ZNF705AQ6ZN79 300 aaPredicted RBP2.59□□□□□ -2
VPS13A-212ENST00000493341 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.59□□□□□ -2
VPS13A-212ENST00000493341 SLC7A6Q92536 515 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 GPR146Q96CH1 333 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 DERL1Q9BUN8 251 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 BOLA2Q9H3K6 86 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 BIN3Q9NQY0 253 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 PAPPA2Q9BXP8 1791 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 NID2Q14112 1375 aa2.59□□□□□ -2
VPS13A-212ENST00000493341 DOCK6Q96HP0 2047 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 IFNA21P01568 189 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 IGKV1-5P01602 117 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 COL8A2P25067 703 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 NCALDP61601 193 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 MOGQ16653 247 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 RPL22L1Q6P5R6 122 aaKnown RBP2.58□□□□□ -2
VPS13A-212ENST00000493341 STX19Q8N4C7 294 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 H1FXQ92522 213 aaKnown RBP2.58□□□□□ -2
VPS13A-212ENST00000493341 XAGE1AQ9HD64 81 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 PRNDQ9UKY0 176 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 TIMM22Q9Y584 194 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 TMEM235A6NFC5 223 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 C11orf86A6NJI1 115 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 H3BQV1 296 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 CCL20P78556 96 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 MIAQ16674 131 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 AKR1C8PQ5T2L2 129 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 TAC4Q86UU9 113 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 ZNF561Q8N587 486 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 C12orf45Q8N5I9 185 aaPredicted RBP2.58□□□□□ -2
VPS13A-212ENST00000493341 TEX47Q8TBZ9 253 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 OR8D2Q9GZM6 311 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 C20orf27Q9GZN8 174 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 AICDAQ9GZX7 198 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 TVP23BQ9NYZ1 205 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 NAT8Q9UHE5 227 aa2.58□□□□□ -2
VPS13A-212ENST00000493341 RBM7Q9Y580 266 aaKnown RBP2.58□□□□□ -2
VPS13A-212ENST00000493341 MED23Q9ULK4 1368 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms