RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ADAMTSL5Q6ZMM2 481 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PAQR9Q6ZVX9 377 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KRTAP5-5Q701N2 237 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MOB1BQ7L9L4 216 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 H2BFWTQ7Z2G1 175 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 FAM19A5Q7Z5A7 132 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 HMGN2P46Q86SG4 172 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OOSP2Q86WS3 158 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF547Q8IVP9 402 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 C20orf196Q8IYI0 205 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 C1orf174Q8IYL3 243 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF101Q8IZC7 436 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CA13Q8N1Q1 262 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OSR2Q8N2R0 312 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM256Q8N2U0 113 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 RNF175Q8N4F7 328 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 DEFB125Q8N687 156 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF615Q8N8J6 731 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 COX18Q8N8Q8 333 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZDHHC22Q8N966 263 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR4K17Q8NGC6 315 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR51A4Q8NGJ6 313 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR1L8Q8NGR8 309 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR2T29Q8NH02 315 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR5B3Q8NH48 314 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CT45A3Q8NHU0 189 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PLPPR1Q8TBJ4 325 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 LGALS14Q8TCE9 139 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 RNF138Q8WVD3 245 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM37Q8WXS4 190 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PIGCQ92535 297 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NAT6Q93015 286 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NEIL2Q969S2 332 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PPCDCQ96CD2 204 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MS4A6EQ96DS6 147 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SEC22AQ96IW7 307 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF488Q96MN9 340 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 AP1S3Q96PC3 154 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SDF2Q99470 211 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 GABRG3Q99928 467 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 HSPB9Q9BQS6 159 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 RTBDNQ9BSG5 229 aaPredicted RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 DOHHQ9BU89 302 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 APOOQ9BUR5 198 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SCRT1Q9BWW7 348 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 GABARAPL3Q9BY60 117 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM126AQ9H061 195 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 PARP12Q9H0J9 701 aaKnown RBP1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR2D2Q9H210 308 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 MAP1LC3AQ9H492 121 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 IKZF5Q9H5V7 419 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZDHHC11Q9H8X9 412 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 RDH14Q9HBH5 336 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 NMRAL1Q9HBL8 299 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SH2D2AQ9NP31 389 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CYTL1Q9NRR1 136 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM106BQ9NUM4 274 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 HRASLS2Q9NWW9 162 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KCNIP1Q9NZI2 227 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CLCF1Q9UBD9 225 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 OR5V1Q9UGF6 321 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SLC2A6Q9UGQ3 507 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 AK3Q9UIJ7 227 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ANXA10Q9UJ72 324 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 SIGLEC9Q9Y336 463 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 WASHC3Q9Y3C0 194 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF780BQ9Y6R6 833 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 CHD5Q8TDI0 1954 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 KIAA1549LQ6ZVL6 1849 aa1.52□□□□□ -2.17
HMGB1-208ENST00000490788 DIDO1Q9BTC0 2240 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 BAZ2BQ9UIF8 2168 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 IGLV8-61A0A075B6I0 122 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 TRAV36DV7A0A075B6V5 113 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 hCG_1818297A0A087WSY0 165 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 MUC21A0A0G2JKD1 596 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 MUC21A0A140T8X8 626 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 A0A1B0GV50 99 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 LRP5LA4QPB2 252 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR4C46A6NHA9 309 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 C9JAW5 83 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 H0YL77 283 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 C15orf65H3BRN8 121 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GABARAPH6UMI1 98 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 J3KT08 172 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 J3QR89 54 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CLDN5O00501 218 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SDCBPO00560 298 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CD5LO43866 347 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 REM1O75628 298 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SERF1AO75920 110 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 DIRAS1O95057 198 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 NDUFB6O95139 128 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SLC2A10O95528 541 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 MOSP00540 346 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CD8AP01732 235 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 IGHG4P01861 327 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 HLA-DQB2P05538 268 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CT62P0C5K7 136 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 LINC00694P0DN24 101 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms