RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SPCS3P61009 180 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 SCGB2B2Q4G0G5 96 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 AARDQ4LEZ3 155 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 PSMG4Q5JS54 123 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 C16orf54Q6UWD8 224 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 OR1S2Q8NGQ3 325 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 OR52E5Q8NH55 327 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 TERB2Q8NHR7 220 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 LHFPL5Q8TAF8 219 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 MARCH1Q8TCQ1 289 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 RAB40CQ96S21 281 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 EXTL2Q9UBQ6 330 aa8.94□□□□□ -0.98
CPSF3-204ENST00000489403 HELTA6NFD8 242 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 B3GALNT1O75752 331 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 OR5AC1P0C628 307 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 EIF2B2P49770 351 aaKnown RBP8.93□□□□□ -0.98
CPSF3-204ENST00000489403 RND2P52198 227 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 USF2Q15853 346 aaPredicted RBP8.93□□□□□ -0.98
CPSF3-204ENST00000489403 C12orf74Q32Q52 190 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 C2orf83Q53S99 150 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 MZT2AQ6P582 158 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 PRSS54Q6PEW0 395 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 ZNF767PQ75MW2 155 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 FAM219AQ8IW50 185 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 TMEM229BQ8NBD8 167 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 Q8WTZ3 238 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 ABHD1Q96SE0 405 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 RNF126Q9BV68 326 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 PKHD1P08F94 4074 aa8.93□□□□□ -0.98
CPSF3-204ENST00000489403 DEFB131BA0A096LNP1 70 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 FAM90A26D6RGX4 464 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 CDS2O95674 445 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 RAB3DO95716 219 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 AMBPP02760 352 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 IL4P05112 153 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 SLC25A4P12235 298 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 OR10J1P30954 320 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 AP2S1P53680 142 aaPredicted RBP8.92□□□□□ -0.98
CPSF3-204ENST00000489403 TAS2R19P59542 299 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 YPEL3P61236 119 aaPredicted RBP8.92□□□□□ -0.98
CPSF3-204ENST00000489403 DHODHQ02127 395 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 FAAP20Q6NZ36 180 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 STEAP1BQ6NZ63 245 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 CENPSQ8N2Z9 138 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 SLC24A4Q8NFF2 622 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 RNASEH2CQ8TDP1 164 aaKnown RBP8.92□□□□□ -0.98
CPSF3-204ENST00000489403 GLYATL2Q8WU03 294 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 TMEM170AQ8WVE7 144 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 AP3S1Q92572 193 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 RBPMSQ93062 196 aaKnown RBP8.92□□□□□ -0.98
CPSF3-204ENST00000489403 NAA50Q9GZZ1 169 aaKnown RBP8.92□□□□□ -0.98
CPSF3-204ENST00000489403 TMEM222Q9H0R3 208 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.92□□□□□ -0.98
CPSF3-204ENST00000489403 CACNG5Q9UF02 275 aa8.92□□□□□ -0.98
CPSF3-204ENST00000489403 TEX13DA0A0J9YY54 714 aaPredicted RBP8.91□□□□□ -0.98
CPSF3-204ENST00000489403 A0A1B0GVY2 172 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 H3BMM0 161 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 NXPH3O95157 252 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 LINC00336Q6ZUF6 198 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 SELENOHQ8IZQ5 122 aaKnown RBP8.91□□□□□ -0.98
CPSF3-204ENST00000489403 GPR146Q96CH1 333 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 RTBDNQ9BSG5 229 aaPredicted RBP8.91□□□□□ -0.98
CPSF3-204ENST00000489403 SCRT1Q9BWW7 348 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 NAA60Q9H7X0 242 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 NRN1Q9NPD7 142 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 HEYLQ9NQ87 328 aaPredicted RBP8.91□□□□□ -0.98
CPSF3-204ENST00000489403 XCL2Q9UBD3 114 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 DNAH17Q9UFH2 4485 aa8.91□□□□□ -0.98
CPSF3-204ENST00000489403 CEBPZOSA8MTT3 80 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 BUB3O43684 328 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 GABARAPO95166 117 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 TOMM40O96008 361 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 ZNF182P17025 639 aaPredicted RBP8.9□□□□□ -0.98
CPSF3-204ENST00000489403 NUTF2P61970 127 aaKnown RBP8.9□□□□□ -0.98
CPSF3-204ENST00000489403 SNRPD3P62318 126 aaKnown RBP8.9□□□□□ -0.98
CPSF3-204ENST00000489403 MEF2DQ14814 521 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 CTF1Q16619 201 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 SIGLEC15Q6ZMC9 328 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 NPIPB3Q92617 1050 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 C1QTNF4Q9BXJ3 329 aa8.9□□□□□ -0.98
CPSF3-204ENST00000489403 SEPSECSQ9HD40 501 aaKnown RBP8.9□□□□□ -0.98
CPSF3-204ENST00000489403 C14orf166Q9Y224 244 aaKnown RBP8.9□□□□□ -0.98
CPSF3-204ENST00000489403 CRYM-AS1A6NIL9 109 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 GABARAPH6UMI1 98 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 HLA-DRB4P13762 266 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 NPY1RP25929 384 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 GPR107Q5VW38 600 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 TMEM268Q5VZI3 342 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 ETFRF1Q6IPR1 90 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 POM121L12Q8N7R1 296 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 C15orf40Q8WUR7 153 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 ACY3Q96HD9 319 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 MIXL1Q9H2W2 232 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 HLA-DRB4X5D2U9 266 aa8.89□□□□□ -0.99
CPSF3-204ENST00000489403 GSTZ1O43708 216 aaPredicted RBP8.88□□□□□ -0.99
CPSF3-204ENST00000489403 RD3LP0DJH9 198 aa8.88□□□□□ -0.99
CPSF3-204ENST00000489403 P0DMU3 169 aa8.88□□□□□ -0.99
CPSF3-204ENST00000489403 FAM231AP0DMU4 169 aa8.88□□□□□ -0.99
CPSF3-204ENST00000489403 FAM231CP0DMU5 169 aa8.88□□□□□ -0.99
CPSF3-204ENST00000489403 PSG1P11464 419 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms