RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZNF596Q8TC21 504 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 VN1R17PQ8TDU5 208 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 SGK494Q96LW2 274 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 CDC42EP3Q9UKI2 254 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 ACACAQ13085 2346 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 E7EQL1 145 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 IGHV1-8P0DP01 117 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 CNTFRP26992 372 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 VMA21Q3ZAQ7 101 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 LBHQ53QV2 105 aaPredicted RBP14.44□□□□□ -0.1
VIM-206ENST00000487938 TPTE2P1Q5T6R2 138 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 Q8NA96 180 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 SNHG12Q9BXW3 62 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 SSUH2Q9Y2M2 353 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 RNF114Q9Y508 228 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 KIR2DL5BA0A0G2JN68 375 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 KIR2DL5BA0A0G2JPC4 375 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 FSTL3O95633 263 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 AMY1AP04745 511 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 GNG5P63218 68 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 RPL19P84098 196 aaKnown RBP14.43□□□□□ -0.1
VIM-206ENST00000487938 KIR2DL5AQ8N109 375 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 BLNKQ8WV28 456 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 FXYD5Q96DB9 178 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 RCHY1Q96PM5 261 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 ATG101Q9BSB4 218 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 VSTM5A8MXK1 200 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 C22orf46C9J442 243 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 BPIFB3P59826 476 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 TMEM155Q4W5P6 130 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 PRR30Q53SZ7 412 aaPredicted RBP14.43□□□□□ -0.1
VIM-206ENST00000487938 PRR27Q6MZM9 219 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 C11orf42Q8N5U0 333 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 SIGLECL1Q8N7X8 197 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 THAP8Q8NA92 274 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 OR1B1Q8NGR6 318 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 JKAMPQ9P055 326 aa14.43□□□□□ -0.1
VIM-206ENST00000487938 MUC6Q6W4X9 2439 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 SHISA9B4DS77 424 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 PEX7O00628 323 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 MT-ND6P03923 174 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 SRIP30626 198 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 MFAP2P55001 183 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 FAM71F2Q6NXP2 309 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 ASCL5Q7RTU5 278 aa14.42□□□□□ -0.1
VIM-206ENST00000487938 LYNX1G3V0Z9 82 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 ZNF253O75346 499 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 GPX1P07203 203 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 LYNX1P0DP58 116 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 MC5RP33032 325 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 ZNF705AQ6ZN79 300 aaPredicted RBP14.41□□□□□ -0.1
VIM-206ENST00000487938 C8orf31Q8N9H6 132 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 TNFRSF19Q9NS68 423 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 FBXL7Q9UJT9 491 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 PAM16Q9Y3D7 125 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 IZUMO1RA6ND01 250 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 BMPR1BO00238 502 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 BRS3P32247 399 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 SSTP61278 116 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 TNXAQ16473 311 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 NUDT10Q8NFP7 164 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 NUDT11Q96G61 164 aa14.41□□□□□ -0.1
VIM-206ENST00000487938 IGLC7A0M8Q6 106 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 ZNF137PP52743 207 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 KRTDAPP60985 99 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 TMEM133Q9H2Q1 129 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 RPH3ALQ9UNE2 315 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 A0A1W2PS18 150 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 APCSP02743 223 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 PMCHP20382 165 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 TEX43Q6ZNM6 134 aa14.4□□□□□ -0.1
VIM-206ENST00000487938 GSX1Q9H4S2 264 aaPredicted RBP14.4□□□□□ -0.1
VIM-206ENST00000487938 ZNF331Q9NQX6 463 aaPredicted RBP14.4□□□□□ -0.1
VIM-206ENST00000487938 TBL2Q9Y4P3 447 aaKnown RBP14.4□□□□□ -0.1
VIM-206ENST00000487938 SPTBN2O15020 2390 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 IGHV1-69-2A0A0G2JMI3 117 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 H3BTX0 84 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 CORTO00230 105 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 SLAQ13239 276 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 OR10J3Q5JRS4 329 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 KAAG1Q9UBP8 84 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 PGPA6NDG6 321 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 HLA-DQA1P01909 254 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 SLC25A5P05141 298 aaKnown RBP14.39□□□□□ -0.11
VIM-206ENST00000487938 LGALS7P47929 136 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 AMTP48728 403 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 COMPP49747 757 aaPredicted RBP14.39□□□□□ -0.11
VIM-206ENST00000487938 ZNF841Q6ZN19 808 aa14.39□□□□□ -0.11
VIM-206ENST00000487938 M0R143 59 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 TBR1Q16650 682 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 COX19Q49B96 90 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 PRR31Q5SQ13 230 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 LEMD1Q68G75 181 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 TMEM68Q96MH6 324 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 NRN1Q9NPD7 142 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 RPL27AP46776 148 aaKnown RBP14.38□□□□□ -0.11
VIM-206ENST00000487938 NUTF2P61970 127 aaKnown RBP14.38□□□□□ -0.11
VIM-206ENST00000487938 FAM19A2Q8N3H0 131 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 NUP35Q8NFH5 326 aa14.38□□□□□ -0.11
VIM-206ENST00000487938 MBD6Q96DN6 1003 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms