RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 RAB11AP62491 216 aa11.98□□□□□ -0.49
UPF3A-208ENST00000484246 TOMM20LQ6UXN7 152 aa11.98□□□□□ -0.49
UPF3A-208ENST00000484246 Q8N1Y9 231 aa11.98□□□□□ -0.49
UPF3A-208ENST00000484246 GINS3Q9BRX5 216 aa11.98□□□□□ -0.49
UPF3A-208ENST00000484246 MAGT1Q9H0U3 335 aa11.98□□□□□ -0.49
UPF3A-208ENST00000484246 ZNF785A8K8V0 405 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 A8MZ25 164 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 SCAF4O95104 1147 aaKnown RBP11.97□□□□□ -0.49
UPF3A-208ENST00000484246 TAS2R30P59541 319 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 POLR2GP62487 172 aaKnown RBP eCLIP11.97□□□□□ -0.49
UPF3A-208ENST00000484246 BTNL8Q6UX41 500 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 TMEM61Q8N0U2 210 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 SMIM8Q96KF7 97 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 RAB40CQ96S21 281 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 B9D2Q9BPU9 175 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 C20orf24Q9BUV8 137 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 GPN1Q9HCN4 374 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-208ENST00000484246 SMPXQ9UHP9 88 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 PUS1Q9Y606 427 aaKnown RBP eCLIP11.97□□□□□ -0.49
UPF3A-208ENST00000484246 SMAD5-AS1Q9Y6J3 95 aa11.97□□□□□ -0.49
UPF3A-208ENST00000484246 IGHV7-4-1A0A0J9YVY3 117 aa11.96□□□□□ -0.49
UPF3A-208ENST00000484246 INMT-MINDY4F8WBC2 141 aa11.96□□□□□ -0.49
UPF3A-208ENST00000484246 WRBO00258 174 aa11.96□□□□□ -0.49
UPF3A-208ENST00000484246 OR10J1P30954 320 aa11.96□□□□□ -0.49
UPF3A-208ENST00000484246 NPIPB3Q92617 1050 aa11.96□□□□□ -0.49
UPF3A-208ENST00000484246 RCL1Q9Y2P8 373 aaKnown RBP11.96□□□□□ -0.49
UPF3A-208ENST00000484246 STRAPQ9Y3F4 350 aaKnown RBP11.96□□□□□ -0.49
UPF3A-208ENST00000484246 CCSO14618 274 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 TSC22D2O75157 780 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 YIF1AO95070 293 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 BMI1P35226 326 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 TIGITQ495A1 244 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 GTSCR1Q86UQ5 136 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 SLC35E1Q96K37 410 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 C2orf50Q96LR7 162 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 SPAG8Q99932 426 aaPredicted RBP11.95□□□□□ -0.5
UPF3A-208ENST00000484246 VSIRQ9H7M9 311 aa11.95□□□□□ -0.5
UPF3A-208ENST00000484246 IGHV3OR16-8A0A075B7F1 116 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 TRAV14DV4A0A0A6YYC5 116 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 CHEK1O14757 476 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 TSPAN4O14817 238 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 SSSCA1O60232 199 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 PTTG1O95997 202 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 TOMM40O96008 361 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 MBPP02686 304 aaPredicted RBP11.94□□□□□ -0.5
UPF3A-208ENST00000484246 PAX9P55771 341 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 IL15RAQ13261 267 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 GAMTQ14353 236 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 DEFB121Q5J5C9 76 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 SPANXN5Q5MJ07 72 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 TMEM14EPQ6UXP3 125 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 WDR89Q96FK6 387 aaPredicted RBP11.94□□□□□ -0.5
UPF3A-208ENST00000484246 ACY3Q96HD9 319 aa11.94□□□□□ -0.5
UPF3A-208ENST00000484246 IGKV1D-37A0A075B6S9 117 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 PMS2P5A8MQ11 134 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 H3BP45 60 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 J3QL48 77 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 ZNF207O43670 478 aaKnown RBP11.93□□□□□ -0.5
UPF3A-208ENST00000484246 CD5P06127 495 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 CRYBB3P26998 211 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 LAMTOR1Q6IAA8 161 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 GSG1LQ6UXU4 331 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 THAP8Q8NA92 274 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 Q8WTZ3 238 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 RHPN1-AS1Q9BWJ2 59 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 C11orf1Q9H5F2 150 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 C19orf73Q9NVV2 129 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 PSENENQ9NZ42 101 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 GSKIPQ9P0R6 139 aa11.93□□□□□ -0.5
UPF3A-208ENST00000484246 C7orf66A4D0T2 115 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 C5orf51A6NDU8 294 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 FNDC10F2Z333 226 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 FAM90A2PQ658T7 463 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 RBPMS2Q6ZRY4 209 aaKnown RBP11.92□□□□□ -0.5
UPF3A-208ENST00000484246 METTL26Q96S19 204 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 TRGV9Q99603 122 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 TMEM231Q9H6L2 316 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 U3KQE9 123 aa11.92□□□□□ -0.5
UPF3A-208ENST00000484246 K7EPK0 472 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 SCGB1D2O95969 90 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 FABP1P07148 127 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 IGHV4-30-4P0DP06 118 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 GUCA2BQ16661 112 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 ACOT7LQ6ZUV0 252 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 RNF2Q99496 336 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 FAM110AQ9BQ89 295 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 NEURL2Q9BR09 285 aa11.91□□□□□ -0.5
UPF3A-208ENST00000484246 SORL1Q92673 2214 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 IGKV1OR2-108A0A075B7D4 117 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 A0A1W2PS18 150 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 FAM25EA8MYX2 175 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 RD3LP0DJH9 198 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 PSG1P11464 419 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 NPPCP23582 126 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 CD81P60033 236 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 DLK1P80370 383 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 ST8SIA2Q92186 375 aa11.9□□□□□ -0.5
UPF3A-208ENST00000484246 PAIP2BQ9ULR5 123 aaKnown RBP11.9□□□□□ -0.5
UPF3A-208ENST00000484246 TRAV2A0A0B4J234 112 aa11.89□□□□□ -0.51
UPF3A-208ENST00000484246 ZFP92A6NM28 416 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms