RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SCGB2A2Q13296 93 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 NUMA1Q14980 2115 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SMIM21Q3B7S5 101 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 FAM78AQ5JUQ0 283 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 TPTE2P1Q5T6R2 138 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 PVRIGQ6DKI7 326 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IGFL2Q6UWQ7 119 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 Q6ZSR3 168 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 FA2HQ7L5A8 372 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 LYZL2Q7Z4W2 148 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 HMGN2P46Q86SG4 172 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SAXO1Q8IYX7 474 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 CA13Q8N1Q1 262 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 C2orf73Q8N5S3 287 aaPredicted RBP3.93□□□□□ -1.78
USP40-213ENST00000483216 ZNF321PQ8N8H1 164 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 BHLHE23Q8NDY6 225 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 OR5D18Q8NGL1 313 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 OR10G9Q8NGN4 311 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 OR10AC1Q8NH08 325 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IL1F10Q8WWZ1 152 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 C11orf40Q8WZ69 217 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 BORCS8Q96FH0 119 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 ZNF799Q96GE5 643 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 KCNS1Q96KK3 526 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 HSPB9Q9BQS6 159 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 TMEM147Q9BVK8 224 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 HES7Q9BYE0 225 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 CHRNA10Q9GZZ6 450 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 TMEM191AQ9H0A3 160 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SH3BGRL3Q9H299 93 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 CST9LQ9H4G1 147 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IL36BQ9NZH7 164 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 KCNIP1Q9NZI2 227 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 RABAC1Q9UI14 185 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SOX21Q9Y651 276 aaPredicted RBP3.93□□□□□ -1.78
USP40-213ENST00000483216 ATG2AQ2TAZ0 1938 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 TRPM6Q9BX84 2022 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 IGKV1D-42A0A075B6H8 117 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 TMED7-TICAM2A0A0A6YYA0 188 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 PINLYPA6NC86 204 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 FAM24AA6NFZ4 105 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 TMEM238C9JI98 176 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 C11orf94C9JXX5 98 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 HCRTR1O43613 425 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 ANGPTL7O43827 346 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 CHST1O43916 411 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 OR7C2O60412 319 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 PDCD6O75340 191 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 TNFP01375 233 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 PCCBP05166 539 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 GPX1P07203 203 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 NBEAP1P0C6P0 100 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 TSPOP30536 169 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 TGFBR3Q03167 851 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 CATR1Q13166 79 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 FAM78BQ5VT40 261 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 ASCL4Q6XD76 172 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 BHLHA15Q7RTS1 189 aaPredicted RBP3.92□□□□□ -1.78
USP40-213ENST00000483216 VN1R4Q7Z5H5 301 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 TMEM144Q7Z5S9 345 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 C17orf82Q86X59 251 aaPredicted RBP3.92□□□□□ -1.78
USP40-213ENST00000483216 TMEM123Q8N131 208 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 OSR2Q8N2R0 312 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 OR4P4Q8NGL7 312 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 SGMS2Q8NHU3 365 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 ZNF596Q8TC21 504 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 OR51E1Q8TCB6 317 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 COMMD5Q9GZQ3 224 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 PARP12Q9H0J9 701 aaKnown RBP3.92□□□□□ -1.78
USP40-213ENST00000483216 UBE2ZQ9H832 354 aaPredicted RBP3.92□□□□□ -1.78
USP40-213ENST00000483216 ZNF160Q9HCG1 818 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 ZNF331Q9NQX6 463 aaPredicted RBP3.92□□□□□ -1.78
USP40-213ENST00000483216 RPRMQ9NS64 109 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 PSENENQ9NZ42 101 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 OR1A1Q9P1Q5 309 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 CLN8Q9UBY8 286 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 HSPB8Q9UJY1 196 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 PPIAL4AQ9Y536 164 aa3.92□□□□□ -1.78
USP40-213ENST00000483216 DOCK8Q8NF50 2099 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 UNC80Q8N2C7 3258 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 YLPM1P49750 1951 aaKnown RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 IGSF23A1L1A6 192 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 NKX2-6A6NCS4 301 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 H0YGG7 62 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 H7C1C5 153 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 SLC17A3O00476 420 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CCL25O15444 150 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 RBFOX2O43251 390 aaKnown RBP eCLIP3.91□□□□□ -1.78
USP40-213ENST00000483216 XRCC2O43543 280 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 YPEL1O60688 119 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 HYPMO75409 117 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 ZNF324O75467 553 aaPredicted RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 HSBP1O75506 76 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 STAG3L2P0CL84 134 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CT45A6P0DMU7 189 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CT45A5P0DMU8 189 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CT45A7P0DMV0 189 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 CTLA4P16410 223 aa3.91□□□□□ -1.78
USP40-213ENST00000483216 MDKP21741 143 aaPredicted RBP3.91□□□□□ -1.78
USP40-213ENST00000483216 F2RP25116 425 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms