RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 ZNF79Q15937 498 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 NMSQ5H8A3 153 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 TMED4Q7Z7H5 227 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 LYG2Q86SG7 212 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 RNASEH2CQ8TDP1 164 aaKnown RBP10.97□□□□□ -0.65
LIMS4-202ENST00000480598 METTL26Q96S19 204 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 TMEM231Q9H6L2 316 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 SHPKQ9UHJ6 478 aa10.97□□□□□ -0.65
LIMS4-202ENST00000480598 HYDINQ4G0P3 5121 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 TRAV30A0A087WSZ9 112 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 SCGB2A1O75556 95 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 SLC25A4P12235 298 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 CRYBB3P26998 211 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 FAUP35544 74 aaKnown RBP10.96□□□□□ -0.65
LIMS4-202ENST00000480598 P2RY1P47900 373 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 CCR6P51684 374 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 DEFB131AP59861 70 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 TNFRSF9Q07011 255 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 SMCO1Q147U7 214 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 RBMS2Q15434 407 aaKnown RBP10.96□□□□□ -0.65
LIMS4-202ENST00000480598 LEMD1Q68G75 181 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 LGI3Q8N145 548 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 TOMM5Q8N4H5 51 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 OR1S2Q8NGQ3 325 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 RBM38Q9H0Z9 239 aaKnown RBP10.96□□□□□ -0.65
LIMS4-202ENST00000480598 CSTL1Q9H114 145 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 RABAC1Q9UI14 185 aa10.96□□□□□ -0.65
LIMS4-202ENST00000480598 A0A1W2PS18 150 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 JTBO76095 146 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 ANXA3P12429 323 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 OR10J1P30954 320 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 STXBP6Q8NFX7 210 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 NPIPB3Q92617 1050 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 ACY3Q96HD9 319 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 RBKSQ9H477 322 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 HSPB7Q9UBY9 170 aa10.95□□□□□ -0.66
LIMS4-202ENST00000480598 TRAV2A0A0B4J234 112 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 CXorf65A6NEN9 183 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 MPTX1A8MV57 137 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 IFNA10P01566 189 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 S100A5P33763 92 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 AP3S2P59780 193 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 SRPXP78539 464 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 DTD1Q8TEA8 209 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 Q8WTZ3 238 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 CACFD1Q9UGQ2 172 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 U3KQE9 123 aa10.94□□□□□ -0.66
LIMS4-202ENST00000480598 K7EQG2 157 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 YPEL3P61236 119 aaPredicted RBP10.93□□□□□ -0.66
LIMS4-202ENST00000480598 USF2Q15853 346 aaPredicted RBP10.93□□□□□ -0.66
LIMS4-202ENST00000480598 ETFRF1Q6IPR1 90 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 CCDC190Q86UF4 302 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 NOXA1Q86UR1 476 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 OR1S1Q8NH92 325 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 NARS2Q96I59 477 aaKnown RBP10.93□□□□□ -0.66
LIMS4-202ENST00000480598 U3KQ87 197 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 AGRNO00468 2067 aa10.93□□□□□ -0.66
LIMS4-202ENST00000480598 CA1P00915 261 aaPredicted RBP10.92□□□□□ -0.66
LIMS4-202ENST00000480598 IL4P05112 153 aa10.92□□□□□ -0.66
LIMS4-202ENST00000480598 HNRNPCP07910 306 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIMS4-202ENST00000480598 ZNF688P0C7X2 276 aa10.92□□□□□ -0.66
LIMS4-202ENST00000480598 VAMP1P23763 118 aa10.92□□□□□ -0.66
LIMS4-202ENST00000480598 TMEM128Q5BJH2 165 aa10.92□□□□□ -0.66
LIMS4-202ENST00000480598 GRAMD2BQ96HH9 432 aa10.92□□□□□ -0.66
LIMS4-202ENST00000480598 PITX3O75364 302 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 TOMM40O96008 361 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 IFNA4P05014 189 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 PPP1R1AQ13522 171 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 C16orf54Q6UWD8 224 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 STHQ8IWL8 128 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 DCANP1Q8TF63 244 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 GLMPQ8WWB7 406 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 RARRES2Q99969 163 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 SRRQ9GZT4 340 aa10.91□□□□□ -0.66
LIMS4-202ENST00000480598 DUXBA0A1W2PPF3 345 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 KNCNA6PVL3 124 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 SFT2D2O95562 160 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 RD3LP0DJH9 198 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 IAPPP10997 89 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 PSG1P11464 419 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 OR11H2Q8NH07 326 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 GATAD1Q8WUU5 269 aa10.9□□□□□ -0.66
LIMS4-202ENST00000480598 SLC25A21Q9BQT8 299 aaPredicted RBP10.9□□□□□ -0.66
LIMS4-202ENST00000480598 DHRS2Q13268 280 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 SPANXN2Q5MJ10 180 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 CENPSQ8N2Z9 138 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 TMEM217Q8N7C4 229 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 LRTM2Q8N967 370 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 OR51G1Q8NGK1 321 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 DEDD2Q8WXF8 326 aa10.89□□□□□ -0.67
LIMS4-202ENST00000480598 IGKV1D-37A0A075B6S9 117 aa10.88□□□□□ -0.67
LIMS4-202ENST00000480598 PIGBOS1A0A0B4J2F0 54 aa10.88□□□□□ -0.67
LIMS4-202ENST00000480598 NUPR2A6NF83 97 aa10.88□□□□□ -0.67
LIMS4-202ENST00000480598 HELTA6NFD8 242 aa10.88□□□□□ -0.67
LIMS4-202ENST00000480598 ZNF701M0R085 212 aaPredicted RBP10.88□□□□□ -0.67
LIMS4-202ENST00000480598 HOXB5P09067 269 aa10.88□□□□□ -0.67
LIMS4-202ENST00000480598 GIG44P09565 113 aaPredicted RBP10.88□□□□□ -0.67
LIMS4-202ENST00000480598 ATF4P18848 351 aaPredicted RBP10.88□□□□□ -0.67
LIMS4-202ENST00000480598 EIF2B2P49770 351 aaKnown RBP10.88□□□□□ -0.67
LIMS4-202ENST00000480598 ZNF90Q03938 601 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms