RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 UQCR10Q9UDW1 63 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 DIDO1Q9BTC0 2240 aaKnown RBP11.94□□□□□ -0.5
HDAC6-220ENST00000477528 LOC389332A0A1B0GUA5 103 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 A0A1W2PS18 150 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 J3KRW8 73 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 SERF1AO75920 110 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 PTTG1IPP53801 180 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 JOSD1Q15040 202 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-220ENST00000477528 SPANXN1Q5VSR9 72 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 C8orf46Q8TAG6 207 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 HIGD1CA8MV81 97 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 E7EQL1 145 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 CKS2P33552 79 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 CDKN1AP38936 164 aa11.94□□□□□ -0.5
HDAC6-220ENST00000477528 TBL2Q9Y4P3 447 aaKnown RBP11.94□□□□□ -0.5
HDAC6-220ENST00000477528 POLEQ07864 2286 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 IGHV3-35A0A0C4DH35 117 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 PF4V1P10720 104 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 ZNF134P52741 427 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 TEX36Q5VZQ5 186 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 NEU1Q99519 415 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 FREM1Q5H8C1 2179 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 ZNF318Q5VUA4 2279 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 SIAH2O43255 324 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 LEMD1Q68G75 181 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 DUX4L9Q6RFH8 374 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-220ENST00000477528 C11orf42Q8N5U0 333 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 RNF125Q96EQ8 232 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 F5H697 171 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 NPPCP23582 126 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 IGF2-ASQ6U949 168 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 PLA2G2EQ9NZK7 142 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 ATP5J2P56134 94 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 TMEM116Q8NCL8 245 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 KCNS1Q96KK3 526 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 TRGV9Q99603 122 aa11.93□□□□□ -0.5
HDAC6-220ENST00000477528 CEACAM4O75871 244 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 IGHV3-23P01764 117 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 ACTL10Q5JWF8 245 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 COL5A1-AS1Q5SY13 56 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 FOXA3P55318 350 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-220ENST00000477528 RBPMS2Q6ZRY4 209 aaKnown RBP11.92□□□□□ -0.5
HDAC6-220ENST00000477528 DCAF16Q9NXF7 216 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 AMBPP02760 352 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 CD24P25063 80 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 OR10J6PQ8NGY7 276 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 NEUROG1Q92886 237 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 ZNRD1Q9P1U0 126 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 A0A1B0GUT8 65 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 ID1P41134 155 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 TMEM97Q5BJF2 176 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 ZNF833PQ6ZTB9 187 aa11.92□□□□□ -0.5
HDAC6-220ENST00000477528 BUB1B-PAK6H3BSN5 160 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 ZNF25P17030 456 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-220ENST00000477528 ZNF738Q8NE65 137 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 IFITM10A6NMD0 228 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 K7ENP7 123 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 TPTE2P1Q5T6R2 138 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 CIARTQ8N365 385 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-220ENST00000477528 DKK4Q9UBT3 224 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 TMEM155Q4W5P6 130 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 SIGLEC9Q9Y336 463 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 CEP192Q8TEP8 1941 aa11.91□□□□□ -0.5
HDAC6-220ENST00000477528 BTF3P20290 206 aaKnown RBP11.9□□□□□ -0.5
HDAC6-220ENST00000477528 MLANAQ16655 118 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 GOLT1BQ9Y3E0 138 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 Q6AWC8 147 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 OR4C5Q8NGB2 326 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 CCL19Q99731 98 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 NBASA2RRP1 2371 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 PFN1P07737 140 aaKnown RBP11.9□□□□□ -0.5
HDAC6-220ENST00000477528 GPR183P32249 361 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 ZFP30Q9Y2G7 519 aa11.9□□□□□ -0.5
HDAC6-220ENST00000477528 CGB1A6NKQ9 187 aa11.9□□□□□ -0.51
HDAC6-220ENST00000477528 CENPVQ7Z7K6 275 aaPredicted RBP11.9□□□□□ -0.51
HDAC6-220ENST00000477528 OR5AN1Q8NGI8 311 aa11.9□□□□□ -0.51
HDAC6-220ENST00000477528 OR10AG1Q8NH19 301 aa11.9□□□□□ -0.51
HDAC6-220ENST00000477528 F11RQ9Y624 299 aaKnown RBP11.9□□□□□ -0.51
HDAC6-220ENST00000477528 PCNX1Q96RV3 2341 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 A0A1B0GW15 77 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 COL8A2P25067 703 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 PRR30Q53SZ7 412 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-220ENST00000477528 TSKUQ8WUA8 353 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 TMEM190Q8WZ59 177 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 NDUFA4L2Q9NRX3 87 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 IGHV3OR16-10A0A075B7F0 116 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 CX3CL1P78423 397 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 LY6EQ16553 131 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 ST6GALNAC3Q8NDV1 305 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 DPF1Q92782 380 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 GTF3C1Q12789 2109 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 FBLL1A6NHQ2 334 aaKnown RBP11.89□□□□□ -0.51
HDAC6-220ENST00000477528 PSG1P11464 419 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 PYY3Q5JQD4 70 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 DOCK11Q5JSL3 2073 aa11.89□□□□□ -0.51
HDAC6-220ENST00000477528 MED13Q9UHV7 2174 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 SPTBN1Q01082 2364 aaKnown RBP11.88□□□□□ -0.51
HDAC6-220ENST00000477528 A0A1B0GWJ7 208 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 POU2AF1Q16633 256 aa11.88□□□□□ -0.51
HDAC6-220ENST00000477528 OR10J3Q5JRS4 329 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms