RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PRRT1Q99946 306 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 PRR13Q9NZ81 148 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 KLK5Q9Y337 293 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 RPS10-NUDT3A0A1W2PQS6 291 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 GSTZ1O43708 216 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 SCGB2A1O75556 95 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 RND2P52198 227 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 RBMS2Q15434 407 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 STXBP6Q8NFX7 210 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 RNASEH2CQ8TDP1 164 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 DCANP1Q8TF63 244 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 RABL2AQ9UBK7 228 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 RABL2BQ9UNT1 228 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 U3KQE9 123 aa13.72□□□□□ -0.21
CCDC88B-206ENST00000473405 TRAV30A0A087WSZ9 112 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 CEBPZOSA8MTT3 80 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 NXPH3O95157 252 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 GIG44P09565 113 aaPredicted RBP13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 TMBIM6P55061 237 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 NANOS2P60321 138 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM187Q14656 261 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 NMSQ5H8A3 153 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 TRPT1Q86TN4 253 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 OR1S2Q8NGQ3 325 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 IL22RA2Q969J5 263 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 GRAMD2BQ96HH9 432 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 BCL7BQ9BQE9 202 aa13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 SLIRPQ9GZT3 109 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-206ENST00000473405 ZNF688P0C7X2 276 aa13.7□□□□□ -0.22
CCDC88B-206ENST00000473405 SLC25A4P12235 298 aa13.7□□□□□ -0.22
CCDC88B-206ENST00000473405 OR10J1P30954 320 aa13.7□□□□□ -0.22
CCDC88B-206ENST00000473405 SUPT4H1P63272 117 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-206ENST00000473405 STHQ8IWL8 128 aa13.7□□□□□ -0.22
CCDC88B-206ENST00000473405 DNAH6Q9C0G6 4158 aa13.7□□□□□ -0.22
CCDC88B-206ENST00000473405 DEFB4AO15263 64 aa13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 SULT1A3P0DMM9 295 aa13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 SULT1A4P0DMN0 295 aa13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 NPY1RP25929 384 aa13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 YPEL3P61236 119 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 USF2Q15853 346 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 GLMPQ8WWB7 406 aa13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 NARS2Q96I59 477 aaKnown RBP13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 SOSTQ9BQB4 213 aa13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 RBM38Q9H0Z9 239 aaKnown RBP13.69□□□□□ -0.22
CCDC88B-206ENST00000473405 KNCNA6PVL3 124 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 H3BMQ9 156 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 HNRNPCP07910 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 C4BPBP20851 252 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 C16orf54Q6UWD8 224 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 Q8NAQ8 132 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 C11orf45Q8TAV5 145 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 HSPB7Q9UBY9 170 aa13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 RSL24D1Q9UHA3 163 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-206ENST00000473405 LYZL2Q7Z4W2 148 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 RPP25LQ8N5L8 163 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 Q8WTZ3 238 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 NPIPB3Q92617 1050 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 MFFQ9GZY8 342 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 MCUBQ9NWR8 336 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 FBXL17Q9UF56 701 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 SCP2D1Q9UJQ7 156 aa13.67□□□□□ -0.22
CCDC88B-206ENST00000473405 A0A0B4J2A0 478 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 IL4P05112 153 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 SPP1P10451 314 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 TNFSF8P32971 234 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 SMCO1Q147U7 214 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 ACY3Q96HD9 319 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 CACFD1Q9UGQ2 172 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 SHPKQ9UHJ6 478 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 KCNIP3Q9Y2W7 256 aa13.66□□□□□ -0.22
CCDC88B-206ENST00000473405 HELTA6NFD8 242 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 TOMM40O96008 361 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 AKR1C4P17516 323 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 CCR6P51684 374 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 DHRS2Q13268 280 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 ACTL10Q5JWF8 245 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 LGALS9CQ6DKI2 356 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 ETFRF1Q6IPR1 90 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 MORN3Q6PF18 240 aaPredicted RBP13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 DTD1Q8TEA8 209 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 RBKSQ9H477 322 aa13.65□□□□□ -0.22
CCDC88B-206ENST00000473405 FABP12A6NFH5 140 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 DEDDO75618 318 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 IFNA10P01566 189 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 RBMY1A1P0DJD3 496 aaKnown RBP13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 RBMY1CP0DJD4 496 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 EIF2B2P49770 351 aaKnown RBP13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 RBMY1FQ15415 496 aaKnown RBP13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 TMEM41BQ5BJD5 291 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 PSMG4Q5JS54 123 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 NOXA1Q86UR1 476 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 TRIM63Q969Q1 353 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 SCGB3A2Q96PL1 93 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 U3KQ87 197 aa13.64□□□□□ -0.23
CCDC88B-206ENST00000473405 IGHV4-28A0A0C4DH34 117 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 ZNF705EA8MWA4 302 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 FAM90A26D6RGX4 464 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 BUB3O43684 328 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 RD3LP0DJH9 198 aa13.63□□□□□ -0.23
CCDC88B-206ENST00000473405 PSG1P11464 419 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms