RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 RPP25LQ8N5L8 163 aaKnown RBP10.07□□□□□ -0.8
VPS13D-205ENST00000473099 NECAP1Q8NC96 275 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 BPIFCQ8NFQ6 507 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 OR1L4Q8NGR5 311 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 SFT2D1Q8WV19 159 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 RCC1LQ96I51 464 aaKnown RBP10.07□□□□□ -0.8
VPS13D-205ENST00000473099 PFDN5Q99471 154 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 PBDC1Q9BVG4 233 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 PRSS22Q9GZN4 317 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 NPFFR1Q9GZQ6 430 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 TNFRSF19Q9NS68 423 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 MTORP42345 2549 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 SONP18583 2426 aaKnown RBP10.06□□□□□ -0.8
VPS13D-205ENST00000473099 IGKV1D-37A0A075B6S9 117 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 MAP1LC3B2A6NCE7 125 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 FAM223BA6NKX1 122 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 HOXA3O43365 443 aaPredicted RBP10.06□□□□□ -0.8
VPS13D-205ENST00000473099 YIF1AO95070 293 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 LINC00869P0C866 280 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 CD99P14209 185 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 FAM223AQ8IWN6 122 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 SIGLECL1Q8N7X8 197 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 GATAD1Q8WUU5 269 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 CITED4Q96RK1 184 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 MAP1LC3BQ9GZQ8 125 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 VSIRQ9H7M9 311 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 C21orf62Q9NYP8 219 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 FBXL7Q9UJT9 491 aa10.06□□□□□ -0.8
VPS13D-205ENST00000473099 NIPBLQ6KC79 2804 aaeCLIP10.06□□□□□ -0.8
VPS13D-205ENST00000473099 SH2D7A6NKC9 451 aaPredicted RBP10.05□□□□□ -0.8
VPS13D-205ENST00000473099 GNG7O60262 68 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 OR2J3O76001 311 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 IFNA1P01562 189 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 IGLC1P0CG04 106 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 TAGLN2P37802 199 aaKnown RBP10.05□□□□□ -0.8
VPS13D-205ENST00000473099 PPT1P50897 306 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 PMS2P11Q13670 270 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 FAM122CQ6P4D5 195 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 S100A7AQ86SG5 101 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 RAB24Q969Q5 203 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 MRPL32Q9BYC8 188 aaKnown RBP10.05□□□□□ -0.8
VPS13D-205ENST00000473099 SMDT1Q9H4I9 107 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 ZNF355PQ9NSJ1 428 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 MRPL36Q9P0J6 103 aaKnown RBP10.05□□□□□ -0.8
VPS13D-205ENST00000473099 CDC42EP3Q9UKI2 254 aa10.05□□□□□ -0.8
VPS13D-205ENST00000473099 ELOA3CA0A087WX78 387 aaPredicted RBP10.04□□□□□ -0.8
VPS13D-205ENST00000473099 TRBV7-1A0A0A6YYK4 115 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 TMEM89A2RUT3 159 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 LINC01548A6NM66 108 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 G3V318 75 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 IGHV3-48P01763 117 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 PLP1P60201 277 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 YPEL3P61236 119 aaPredicted RBP10.04□□□□□ -0.8
VPS13D-205ENST00000473099 RPL15P61313 204 aaKnown RBP10.04□□□□□ -0.8
VPS13D-205ENST00000473099 BLCAPP62952 87 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 RHOGP84095 191 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 ZNF726P1Q15940 193 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 FAM209BQ5JX69 171 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 SPSB3Q6PJ21 355 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 EEF1AKMT3Q96AZ1 226 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 FAM210AQ96ND0 272 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 SLC25A22Q9H936 323 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 ZFHX3Q15911 3703 aa10.04□□□□□ -0.8
VPS13D-205ENST00000473099 ZNF469Q96JG9 3925 aaPredicted RBP10.04□□□□□ -0.8
VPS13D-205ENST00000473099 HIVEP2P31629 2446 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 IGHV3-21A0A0B4J1V1 117 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 KRBOX1C9JBD0 128 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 CLDN34H7C241 214 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 COX7A2P2O60397 106 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 NDUFB8O95169 186 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 OR5G3P0C626 314 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 PPIFP30405 207 aaKnown RBP10.03□□□□□ -0.8
VPS13D-205ENST00000473099 PSMB3P49720 205 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 TAS2R45P59539 299 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 PEA15Q15121 130 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 C15orf32Q32M92 178 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 Q56UQ5 140 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 LCN15Q6UWW0 184 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 IL17RELQ6ZVW7 336 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 USMG5Q96IX5 58 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 DNAJC4Q9NNZ3 241 aa10.03□□□□□ -0.8
VPS13D-205ENST00000473099 I3L521 148 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 NDUFS6O75380 124 aaKnown RBP10.02□□□□□ -0.81
VPS13D-205ENST00000473099 CXorf1O96002 111 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 TOMM40O96008 361 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 STAG3L2P0CL84 134 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 STAG3L3P0CL85 134 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 SRD5A1P18405 259 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 S100A7P31151 101 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF90Q03938 601 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 ATP5G2Q06055 141 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 FAM78BQ5VT40 261 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 C10orf113Q5VZT2 155 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 OR51G1Q8NGK1 321 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 ZNF502Q8TBZ5 544 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 MANBALQ9NQG1 85 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 TECRQ9NZ01 308 aaKnown RBP10.02□□□□□ -0.81
VPS13D-205ENST00000473099 RNF24Q9Y225 148 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 FUT9Q9Y231 359 aa10.02□□□□□ -0.81
VPS13D-205ENST00000473099 MXRA5Q9NR99 2828 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms