RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CRYGBP07316 175 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 CA7P43166 264 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 PRRX1P54821 245 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 CASP6P55212 293 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 REC114Q7Z4M0 266 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 TEX45Q8NA69 505 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 OR1L6Q8NGR2 347 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 OR1L4Q8NGR5 311 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 IGF2BP2-AS1Q96M15 143 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 RNF2Q99496 336 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 PAXXQ9BUH6 204 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 CLEC7AQ9BXN2 247 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 SIGLEC9Q9Y336 463 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 ATRXP46100 2492 aa7.17□□□□□ -1.26
SYNE1-217ENST00000466159 PPIAL4CA0A0B4J2A2 164 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 ZNF705GA8MUZ8 300 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 GCGP01275 180 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 PPIAL4GP0DN37 164 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 MGST1P10620 155 aaKnown RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 ORM2P19652 201 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 IER3P46695 156 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 RPL27AP46776 148 aaKnown RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 ZNF672Q499Z4 452 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 LINC00305Q7Z4B0 112 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 MRPL41Q8IXM3 137 aaKnown RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 TNFRSF14Q92956 283 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 MRPL18Q9H0U6 180 aaKnown RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 TNFRSF19Q9NS68 423 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 TRAV9-1A0A075B6T8 112 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 CRYGCP07315 174 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 TCL1AP56279 114 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 BPIFB3P59826 476 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 PKIAP61925 76 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 SLC35B1P78383 322 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 UNQ6494/PRO21346Q6UXR6 183 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 ST6GALNAC3Q8NDV1 305 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 FXYD5Q96DB9 178 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 GSX1Q9H4S2 264 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-217ENST00000466159 RAXQ9Y2V3 346 aa7.16□□□□□ -1.26
SYNE1-217ENST00000466159 TRAV34A0A0B4J273 112 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 FCN1O00602 326 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 COMPP49747 757 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-217ENST00000466159 SELENOTP62341 195 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 NHLH1Q02575 133 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 ZNF329Q86UD4 541 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 PPP1R27Q86WC6 154 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 OR1B1Q8NGR6 318 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 FBXL15Q9H469 300 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 OSTCQ9NRP0 149 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 TP53TG3Q9ULZ0 132 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 MSRB2Q9Y3D2 182 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 AMMECR1Q9Y4X0 333 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-217ENST00000466159 SNURFLB1AK76 121 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 ISLRO14498 428 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 CA1P00915 261 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-217ENST00000466159 TAS2R60P59551 318 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 RANP62826 216 aaKnown RBP7.15□□□□□ -1.26
SYNE1-217ENST00000466159 FBXL19-AS1Q494R0 122 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 LDLRAD2Q5SZI1 272 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 IBA57Q5T440 356 aaKnown RBP7.15□□□□□ -1.26
SYNE1-217ENST00000466159 PVRIGQ6DKI7 326 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 ZNF664Q8N3J9 261 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 BEND2Q8NDZ0 799 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 RPEQ96AT9 228 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 SERTAD4Q9NUC0 356 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 ONECUT1Q9UBC0 465 aa7.15□□□□□ -1.26
SYNE1-217ENST00000466159 COL6A6A6NMZ7 2263 aa7.15□□□□□ -1.27
SYNE1-217ENST00000466159 HRNRQ86YZ3 2850 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-217ENST00000466159 TSTD3H0UI37 97 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 CX3CL1P78423 397 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 ETFRF1Q6IPR1 90 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 BLNKQ8WV28 456 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 IGFBPL1Q8WX77 278 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 FAM168AQ92567 244 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 CDC42EP3Q9UKI2 254 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 TEX22C9J3V5 150 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 CRISP2P16562 243 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 DDTP30046 118 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 LINC00310P59036 64 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 GNG5P63218 68 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 ADORA2A-AS1P86434 159 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 TMEM116Q8NCL8 245 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 SSBP3Q9BWW4 388 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-217ENST00000466159 F2Z2F3 143 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 LY6LH3BQJ8 138 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 PEX7O00628 323 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 LEMD1Q68G75 181 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 OR8B3Q8NGG8 313 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 SGK494Q96LW2 274 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 OR8B2Q96RD0 313 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 TRGV9Q99603 122 aa7.14□□□□□ -1.27
SYNE1-217ENST00000466159 SVEP1Q4LDE5 3571 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 SERF1AO75920 110 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 CD33P20138 364 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 ARF6P62330 175 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 MRPL54Q6P161 138 aaKnown RBP7.13□□□□□ -1.27
SYNE1-217ENST00000466159 BAGE2Q86Y30 109 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 C8orf46Q8TAG6 207 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 CMTM2Q8TAZ6 248 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 SRSF12Q8WXF0 261 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms