RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 RND2P52198 227 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 ODF3L2Q3SX64 289 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 TIGITQ495A1 244 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 TCF24Q7RTU0 167 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 Q8WTZ3 238 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 ST8SIA2Q92186 375 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 METTL26Q96S19 204 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 C7orf50Q9BRJ6 194 aaKnown RBP17.11■□□□□ 0.33
PTPN4-208ENST00000460289 NDUFB6O95139 128 aa17.1■□□□□ 0.33
PTPN4-208ENST00000460289 APOHP02749 345 aaPredicted RBP17.1■□□□□ 0.33
PTPN4-208ENST00000460289 IGLC1P0CG04 106 aa17.1■□□□□ 0.33
PTPN4-208ENST00000460289 LYL1P12980 280 aa17.1■□□□□ 0.33
PTPN4-208ENST00000460289 OR10J1P30954 320 aa17.1■□□□□ 0.33
PTPN4-208ENST00000460289 YPEL3P61236 119 aaPredicted RBP17.1■□□□□ 0.33
PTPN4-208ENST00000460289 NARS2Q96I59 477 aaKnown RBP17.1■□□□□ 0.33
PTPN4-208ENST00000460289 SDHCQ99643 169 aaPredicted RBP17.1■□□□□ 0.33
PTPN4-208ENST00000460289 RETNQ9HD89 108 aa17.1■□□□□ 0.33
PTPN4-208ENST00000460289 LINC00854A0A1B0GVQ3 168 aa17.09■□□□□ 0.33
PTPN4-208ENST00000460289 FAM90A26D6RGX4 464 aa17.09■□□□□ 0.33
PTPN4-208ENST00000460289 IGKV3-7A0A075B6H7 116 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 MED6O75586 246 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 DFFBO76075 338 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 IFNA4P05014 189 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 CRYBB3P26998 211 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 TFPI2P48307 235 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 APOC4P55056 127 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 CASC10Q5T4H9 136 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 LILRB2Q8N423 598 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 NPIPB3Q92617 1050 aa17.08■□□□□ 0.32
PTPN4-208ENST00000460289 IGHV3-66A0A0C4DH42 116 aa17.07■□□□□ 0.32
PTPN4-208ENST00000460289 DNASE2O00115 360 aaPredicted RBP17.07■□□□□ 0.32
PTPN4-208ENST00000460289 HOXB5P09067 269 aa17.07■□□□□ 0.32
PTPN4-208ENST00000460289 IL7P13232 177 aa17.07■□□□□ 0.32
PTPN4-208ENST00000460289 GPX4P36969 197 aaPredicted RBP17.07■□□□□ 0.32
PTPN4-208ENST00000460289 RPL11P62913 178 aaKnown RBP17.07■□□□□ 0.32
PTPN4-208ENST00000460289 GBGT1Q8N5D6 347 aa17.07■□□□□ 0.32
PTPN4-208ENST00000460289 ACY3Q96HD9 319 aa17.07■□□□□ 0.32
PTPN4-208ENST00000460289 C9orf170A2RU37 121 aa17.06■□□□□ 0.32
PTPN4-208ENST00000460289 CNPY1Q3B7I2 92 aa17.06■□□□□ 0.32
PTPN4-208ENST00000460289 GRAMD2BQ96HH9 432 aa17.06■□□□□ 0.32
PTPN4-208ENST00000460289 CIB3Q96Q77 187 aaPredicted RBP17.06■□□□□ 0.32
PTPN4-208ENST00000460289 MS4A6AQ9H2W1 248 aa17.06■□□□□ 0.32
PTPN4-208ENST00000460289 KMT2CQ8NEZ4 4911 aaKnown RBP17.06■□□□□ 0.32
PTPN4-208ENST00000460289 TRAV2A0A0B4J234 112 aa17.05■□□□□ 0.32
PTPN4-208ENST00000460289 UBE2CO00762 179 aa17.05■□□□□ 0.32
PTPN4-208ENST00000460289 RAB11AP62491 216 aa17.05■□□□□ 0.32
PTPN4-208ENST00000460289 RPP30P78346 268 aaKnown RBP17.05■□□□□ 0.32
PTPN4-208ENST00000460289 GGNBP1Q5YKI7 109 aa17.05■□□□□ 0.32
PTPN4-208ENST00000460289 COQ8AQ8NI60 647 aa17.05■□□□□ 0.32
PTPN4-208ENST00000460289 FLVCR2Q9UPI3 526 aa17.05■□□□□ 0.32
PTPN4-208ENST00000460289 KIR2DL5BA0A0G2JN68 375 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 KIR2DL5BA0A0G2JPC4 375 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 OR4E1P0C645 316 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 RD3LP0DJH9 198 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 WFDC3Q8IUB2 231 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 APRG1Q8IVJ8 170 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 KIR2DL5AQ8N109 375 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 STPG3Q8N7X2 389 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 KIR2DL5BQ8NHK3 375 aa17.04■□□□□ 0.32
PTPN4-208ENST00000460289 SYNGR2O43760 224 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 TOMM40O96008 361 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 HNRNPCP07910 306 aaKnown RBP eCLIP17.03■□□□□ 0.32
PTPN4-208ENST00000460289 IAPPP10997 89 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 BTCP35070 178 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 P2RY1P47900 373 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 Q6ZWC4 215 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 IL17DQ8TAD2 202 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 SLC35E1Q96K37 410 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 DNAH7Q8WXX0 4024 aa17.03■□□□□ 0.32
PTPN4-208ENST00000460289 IFNA21P01568 189 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 IL4P05112 153 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 EIF2B2P49770 351 aaKnown RBP17.02■□□□□ 0.32
PTPN4-208ENST00000460289 DHRS2Q13268 280 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 GAMTQ14353 236 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 C4orf46Q504U0 113 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 LYG2Q86SG7 212 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 OVOL2Q9BRP0 275 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 MAP6D1Q9H9H5 199 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 RABAC1Q9UI14 185 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 U3KQE9 123 aa17.02■□□□□ 0.32
PTPN4-208ENST00000460289 RPL35AP18077 110 aaKnown RBP17.01■□□□□ 0.31
PTPN4-208ENST00000460289 AP2S1P53680 142 aaPredicted RBP17.01■□□□□ 0.31
PTPN4-208ENST00000460289 LINC00299Q6ZSB3 139 aa17.01■□□□□ 0.31
PTPN4-208ENST00000460289 MAGT1Q9H0U3 335 aa17.01■□□□□ 0.31
PTPN4-208ENST00000460289 PAIP2BQ9ULR5 123 aaKnown RBP17.01■□□□□ 0.31
PTPN4-208ENST00000460289 TP53TG1Q9Y2A0 90 aa17.01■□□□□ 0.31
PTPN4-208ENST00000460289 HELTA6NFD8 242 aa17■□□□□ 0.31
PTPN4-208ENST00000460289 ZFP92A6NM28 416 aa17■□□□□ 0.31
PTPN4-208ENST00000460289 ADAP1O75689 374 aa17■□□□□ 0.31
PTPN4-208ENST00000460289 PSG1P11464 419 aa17■□□□□ 0.31
PTPN4-208ENST00000460289 ANXA7P20073 488 aaKnown RBP17■□□□□ 0.31
PTPN4-208ENST00000460289 WRBO00258 174 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 PLA2G10O15496 165 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 LYRM1O43325 122 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 SPRY2O43597 315 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 FABP1P07148 127 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 USF2Q15853 346 aaPredicted RBP16.99■□□□□ 0.31
PTPN4-208ENST00000460289 ZFAND6Q6FIF0 208 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 STXBP6Q8NFX7 210 aa16.99■□□□□ 0.31
PTPN4-208ENST00000460289 OR51G1Q8NGK1 321 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms