RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 TMED4Q7Z7H5 227 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 LILRB2Q8N423 598 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 OR1S2Q8NGQ3 325 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 Q8WTZ3 238 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 RNF183Q96D59 192 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 MS4A6AQ9H2W1 248 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 RABAC1Q9UI14 185 aa11.29□□□□□ -0.6
CHD3-205ENST00000449744 TRAV2A0A0B4J234 112 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 A0A0J9YWU9 116 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 MPTX1A8MV57 137 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 IGKV1-17P01599 117 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 SUPT4H1P63272 117 aaKnown RBP11.28□□□□□ -0.6
CHD3-205ENST00000449744 TNFRSF9Q07011 255 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 KLF9Q13886 244 aaPredicted RBP11.28□□□□□ -0.6
CHD3-205ENST00000449744 NMSQ5H8A3 153 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 PRSS54Q6PEW0 395 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 LYZL2Q7Z4W2 148 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 LYG2Q86SG7 212 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 OR1S1Q8NH92 325 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 GRAMD2BQ96HH9 432 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 CSTL1Q9H114 145 aa11.28□□□□□ -0.6
CHD3-205ENST00000449744 IGLC1P0CG04 106 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 CRYBB3P26998 211 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 OR10J1P30954 320 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 P2RY1P47900 373 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 DEFB131AP59861 70 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 STXBP6Q8NFX7 210 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 DTD1Q8TEA8 209 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 TRIM63Q969Q1 353 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 HSPB7Q9UBY9 170 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 U3KQ87 197 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 V9GYH0 126 aa11.27□□□□□ -0.61
CHD3-205ENST00000449744 CXorf65A6NEN9 183 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 VAMP1P23763 118 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 EIF2B2P49770 351 aaKnown RBP11.26□□□□□ -0.61
CHD3-205ENST00000449744 YPEL3P61236 119 aaPredicted RBP11.26□□□□□ -0.61
CHD3-205ENST00000449744 TMEM128Q5BJH2 165 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 LEMD1Q68G75 181 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 TMEM217Q8N7C4 229 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 DEDD2Q8WXF8 326 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 NPIPB3Q92617 1050 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 ACY3Q96HD9 319 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 SLC25A21Q9BQT8 299 aaPredicted RBP11.26□□□□□ -0.61
CHD3-205ENST00000449744 RBKSQ9H477 322 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 RYR2Q92736 4967 aa11.26□□□□□ -0.61
CHD3-205ENST00000449744 DUXBA0A1W2PPF3 345 aa11.25□□□□□ -0.61
CHD3-205ENST00000449744 IFNA4P05014 189 aa11.25□□□□□ -0.61
CHD3-205ENST00000449744 HNRNPCP07910 306 aaKnown RBP eCLIP11.25□□□□□ -0.61
CHD3-205ENST00000449744 PMS2P11Q13670 270 aa11.25□□□□□ -0.61
CHD3-205ENST00000449744 RBMS2Q15434 407 aaKnown RBP11.25□□□□□ -0.61
CHD3-205ENST00000449744 TMEM170AQ8WVE7 144 aa11.25□□□□□ -0.61
CHD3-205ENST00000449744 HELTA6NFD8 242 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 IL4P05112 153 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 INPP1P49441 399 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 ATP5IP56385 69 aaPredicted RBP11.24□□□□□ -0.61
CHD3-205ENST00000449744 ZNF79Q15937 498 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 SPANXN2Q5MJ10 180 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 CCDC190Q86UF4 302 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 STHQ8IWL8 128 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 GATAD1Q8WUU5 269 aa11.24□□□□□ -0.61
CHD3-205ENST00000449744 K7EQG2 157 aa11.23□□□□□ -0.61
CHD3-205ENST00000449744 TOMM40O96008 361 aa11.23□□□□□ -0.61
CHD3-205ENST00000449744 CA1P00915 261 aaPredicted RBP11.23□□□□□ -0.61
CHD3-205ENST00000449744 RD3LP0DJH9 198 aa11.23□□□□□ -0.61
CHD3-205ENST00000449744 AP2S1P53680 142 aaPredicted RBP11.23□□□□□ -0.61
CHD3-205ENST00000449744 FAM24BQ8N5W8 94 aa11.23□□□□□ -0.61
CHD3-205ENST00000449744 RARRES2Q99969 163 aa11.23□□□□□ -0.61
CHD3-205ENST00000449744 RBM38Q9H0Z9 239 aaKnown RBP11.23□□□□□ -0.61
CHD3-205ENST00000449744 NUPR2A6NF83 97 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 ZNF701M0R085 212 aaPredicted RBP11.22□□□□□ -0.61
CHD3-205ENST00000449744 SFT2D2O95562 160 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 ZNF688P0C7X2 276 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 ATF4P18848 351 aaPredicted RBP11.22□□□□□ -0.61
CHD3-205ENST00000449744 RAB11AP62491 216 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 DHRS2Q13268 280 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 USF2Q15853 346 aaPredicted RBP11.22□□□□□ -0.61
CHD3-205ENST00000449744 C16orf54Q6UWD8 224 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 CENPSQ8N2Z9 138 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 LRTM2Q8N967 370 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 SLC35E1Q96K37 410 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 PAIP2BQ9ULR5 123 aaKnown RBP11.22□□□□□ -0.61
CHD3-205ENST00000449744 U3KQE9 123 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 STARD9Q9P2P6 4700 aa11.22□□□□□ -0.61
CHD3-205ENST00000449744 ZFP92A6NM28 416 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 MED6O75586 246 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 PSG1P11464 419 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 GPX4P36969 197 aaPredicted RBP11.21□□□□□ -0.61
CHD3-205ENST00000449744 EWSR1Q01844 656 aaKnown RBP eCLIP11.21□□□□□ -0.61
CHD3-205ENST00000449744 TRIQKQ629K1 86 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 OR11H2Q8NH07 326 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 PFDN2Q9UHV9 154 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 TMED3Q9Y3Q3 217 aa11.21□□□□□ -0.61
CHD3-205ENST00000449744 SACSQ9NZJ4 4579 aa11.21□□□□□ -0.62
CHD3-205ENST00000449744 FAM90A26D6RGX4 464 aa11.2□□□□□ -0.62
CHD3-205ENST00000449744 PITX3O75364 302 aa11.2□□□□□ -0.62
CHD3-205ENST00000449744 FABP1P07148 127 aa11.2□□□□□ -0.62
CHD3-205ENST00000449744 IAPPP10997 89 aa11.2□□□□□ -0.62
CHD3-205ENST00000449744 SLC25A6P12236 298 aa11.2□□□□□ -0.62
CHD3-205ENST00000449744 PPP1R1AQ13522 171 aa11.2□□□□□ -0.62
CHD3-205ENST00000449744 OR51G1Q8NGK1 321 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms