RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 JMJD8Q96S16 334 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 GGTLC1Q9BX51 225 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 ABCA7Q8IZY2 2146 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 IGKV1-12A0A0C4DH73 117 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 IGKV1D-12P01611 117 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 UMODP07911 640 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 RBMY1BA6NDE4 496 aaKnown RBP6.47□□□□□ -1.37
NEDD9-204ENST00000448183 RBMY1EA6NEQ0 496 aaKnown RBP6.47□□□□□ -1.37
NEDD9-204ENST00000448183 A6NNC1 897 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 IGKCP01834 107 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 RBMY1DP0C7P1 496 aaKnown RBP6.47□□□□□ -1.37
NEDD9-204ENST00000448183 RBMY1A1P0DJD3 496 aaKnown RBP6.47□□□□□ -1.37
NEDD9-204ENST00000448183 RBMY1CP0DJD4 496 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 GZMBP10144 247 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 BSPH1Q075Z2 132 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 PYY3Q5JQD4 70 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 ZIC4Q8N9L1 334 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 NUDT10Q8NFP7 164 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 CREBBPQ92793 2442 aa6.47□□□□□ -1.37
NEDD9-204ENST00000448183 MED12Q93074 2177 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 MTCL1Q9Y4B5 1905 aaKnown RBP6.46□□□□□ -1.37
NEDD9-204ENST00000448183 LOC102723996A0A087X1L8 192 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 CRYGSP22914 178 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 PLNP26678 52 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 LHX2P50458 406 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 PLAURQ03405 335 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 LINC01559Q495D7 138 aa6.46□□□□□ -1.37
NEDD9-204ENST00000448183 RPP25LQ8N5L8 163 aaKnown RBP6.46□□□□□ -1.37
NEDD9-204ENST00000448183 COL11A1P12107 1806 aaPredicted RBP6.46□□□□□ -1.37
NEDD9-204ENST00000448183 TRAV21A0A0B4J279 112 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 ZNF815PA8K554 130 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 A8MWV9 139 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 HAX1O00165 279 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 SP9P0CG40 484 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 ERVK11-1P61568 191 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 PAX2Q02962 417 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 VWCEQ96DN2 955 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 ANAPC13Q9BS18 74 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 SMPXQ9UHP9 88 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 SCN10AQ9Y5Y9 1956 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 RIPPLY3P57055 190 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 SAMD5Q5TGI4 173 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 SLC25A48Q6ZT89 311 aaKnown RBP6.46□□□□□ -1.38
NEDD9-204ENST00000448183 RNF182Q8N6D2 247 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM133Q9H2Q1 129 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 DOCK10Q96BY6 2186 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 LINC01549A6NIU2 74 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 F2Z2F3 143 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 ZNF883P0CG24 379 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 NMSQ5H8A3 153 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 FLVCR1-AS1Q8TAF5 88 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM190Q8WZ59 177 aa6.46□□□□□ -1.38
NEDD9-204ENST00000448183 GHRHP01286 108 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 CD7P09564 240 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 GAGE13Q4V321 117 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 RASL11AQ6T310 242 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 C9orf106Q8NAJ2 232 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 ITLN2Q8WWU7 325 aaPredicted RBP6.45□□□□□ -1.38
NEDD9-204ENST00000448183 YAE1D1Q9NRH1 226 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 CHTOPQ9Y3Y2 248 aaKnown RBP6.45□□□□□ -1.38
NEDD9-204ENST00000448183 MPDZO75970 2070 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 C8orf46Q8TAG6 207 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 NOTCH3Q9UM47 2321 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 SPTAN1Q13813 2472 aaKnown RBP6.45□□□□□ -1.38
NEDD9-204ENST00000448183 IGHV4-39P01824 125 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 MST1P26927 711 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 FAM166AQ6J272 317 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 LINC01587Q99440 93 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 AGMATQ9BSE5 352 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 TRAV2A0A0B4J234 112 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 IGHV3-11P01762 117 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 PPIFP30405 207 aaKnown RBP6.45□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM14EPQ6UXP3 125 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM256Q8N2U0 113 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 FAM57AQ8TBR7 257 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 ARID2Q68CP9 1835 aa6.45□□□□□ -1.38
NEDD9-204ENST00000448183 NDUFS8O00217 210 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 FOXF2Q12947 444 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 SEPSECSQ9HD40 501 aaKnown RBP6.44□□□□□ -1.38
NEDD9-204ENST00000448183 TRAV5A0A0B4J249 113 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 TRAV12-3A0A0B4J271 114 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 MYOD1P15172 320 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 ACTL10Q5JWF8 245 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 PGPEP1Q9NXJ5 209 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 LY96Q9Y6Y9 160 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 SIPA1L1O43166 1804 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 ZNF236Q9UL36 1845 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 DOCK4Q8N1I0 1966 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 EVI2AP22794 236 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 SRSF4Q08170 494 aaKnown RBP6.44□□□□□ -1.38
NEDD9-204ENST00000448183 CFAP161Q6P656 301 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 KIR3DL3Q8N743 410 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 CRIM1Q9NZV1 1036 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 SLC25A15Q9Y619 301 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 ACACAQ13085 2346 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 TP53BP1Q12888 1972 aaPredicted RBP6.44□□□□□ -1.38
NEDD9-204ENST00000448183 TFF1P04155 84 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 CKS1BP61024 79 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 FGFBP3Q8TAT2 258 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 CCL19Q99731 98 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms