RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PRELID1Q9Y255 219 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 RBM7Q9Y580 266 aaKnown RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 TMEM56-RWDD3S4R434 201 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 COL27A1Q8IZC6 1860 aaPredicted RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 CHD9Q3L8U1 2897 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 FREM3P0C091 2139 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 TRBV6-6A0A0A6YYG2 114 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 SPAARA0A1B0GVQ0 90 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 DUXBA0A1W2PPF3 345 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 H7C2Y5 167 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 M0R036 132 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 CDIPTO14735 213 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 MPDU1O75352 247 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 CST7O76096 145 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 OR2H2O95918 312 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 HAND1O96004 215 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 CD5P06127 495 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 KRTAP1-4P0C5Y4 121 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 PSG2P11465 335 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 CBR1P16152 277 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 ZNF14P17017 642 aaPredicted RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 F2RP25116 425 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 ATP6V0CP27449 155 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 SNCAP37840 140 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 AKR1C3P42330 323 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 RAB5CP51148 216 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 DYNLT3P51808 116 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 TDGF1P3P51864 188 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 RND2P52198 227 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 FGF8P55075 233 aaPredicted RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 TMEM267Q0VDI3 215 aaPredicted RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 ZNF266Q14584 549 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 HMGN3Q15651 99 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 GUK1Q16774 197 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 NMSQ5H8A3 153 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 TPTE2P1Q5T6R2 138 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 ZNF880Q6PDB4 577 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 MRPL55Q7Z7F7 128 aaKnown RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 VKORC1L1Q8N0U8 176 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 CNEP1R1Q8N9A8 125 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 OR5C1Q8NGR4 320 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 OR10Z1Q8NGY1 313 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 UBALD1Q8TB05 177 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 TMEM101Q96IK0 257 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 ABHD14BQ96IU4 210 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 PBDC1Q9BVG4 233 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 BCL2L14Q9BZR8 327 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 EIF5A2Q9GZV4 153 aaKnown RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 SAV1Q9H4B6 383 aaPredicted RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 PATZ1Q9HBE1 687 aaKnown RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 LYRM2Q9NU23 88 aaPredicted RBP2.92□□□□□ -1.94
VPS29-202ENST00000447578 RFNGQ9Y644 331 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 RP1P56715 2156 aa2.92□□□□□ -1.94
VPS29-202ENST00000447578 MKI67P46013 3256 aaKnown RBP2.91□□□□□ -1.94
VPS29-202ENST00000447578 UNC13CQ8NB66 2214 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 ASXL3Q9C0F0 2248 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 TRAV17A0A0B4J275 112 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PIGBOS1A0A0B4J2F0 54 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 A0A1W2PRF3 423 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 A0A1W2PRM7 423 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 TMEM30CPA0ZSE6 113 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 TMEM210A6NLX4 147 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 IQCF6A8MYZ5 107 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 KRTAP4-16G5E9R7 235 aaPredicted RBP2.91□□□□□ -1.94
VPS29-202ENST00000447578 H3BP45 60 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PEX7O00628 323 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PGA5P0DJD9 388 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 OR13C7P0DN81 318 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 IGHV3-43DP0DP04 118 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 IAPPP10997 89 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PPP1CCP36873 323 aaKnown RBP2.91□□□□□ -1.94
VPS29-202ENST00000447578 MPV17P39210 176 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 CEACAM6P40199 344 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 RAB7AP51149 207 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 RUNX1Q01196 453 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 BAXQ07812 192 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PSG7Q13046 419 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 C5orf64Q2M2E5 130 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 DEFB109BQ30KR1 87 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 AKR1C8PQ5T2L2 129 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 TEX43Q6ZNM6 134 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 ZNF826PQ6ZT77 177 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 TGIF2LYQ8IUE0 185 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 Q8IYB0 196 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 ZFP82Q8N141 532 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 WDR31Q8NA23 367 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 C20orf203Q8NBC4 194 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 LFNGQ8NES3 379 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 OR1L1Q8NH94 360 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 SCGB1C1Q8TD33 95 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 KLF14Q8TD94 323 aaPredicted RBP2.91□□□□□ -1.94
VPS29-202ENST00000447578 RXFP4Q8TDU9 374 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 SMCO4Q9NRQ5 59 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PSENENQ9NZ42 101 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 TAAR3PQ9P1P4 343 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 PRELID3BQ9Y3B1 194 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 MYO9BQ13459 2157 aa2.91□□□□□ -1.94
VPS29-202ENST00000447578 C7orf77A4D0Y5 90 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 RBFOX3A6NFN3 312 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 COLCA2A8K830 154 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms