RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MPTX1A8MV57 137 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 AKR1C4P17516 323 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 RND2P52198 227 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 LEMD1Q68G75 181 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 SLC24A4Q8NFF2 622 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 RNASEH2CQ8TDP1 164 aaKnown RBP15.22■□□□□ 0.03
SDC1-205ENST00000447124 SCGB3A2Q96PL1 93 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 METTL26Q96S19 204 aa15.22■□□□□ 0.03
SDC1-205ENST00000447124 RPS10-NUDT3A0A1W2PQS6 291 aa15.21■□□□□ 0.03
SDC1-205ENST00000447124 A0A1W2PS18 150 aa15.21■□□□□ 0.03
SDC1-205ENST00000447124 CXorf65A6NEN9 183 aa15.21■□□□□ 0.03
SDC1-205ENST00000447124 SULT1A3P0DMM9 295 aa15.21■□□□□ 0.03
SDC1-205ENST00000447124 SULT1A4P0DMN0 295 aa15.21■□□□□ 0.03
SDC1-205ENST00000447124 KLF9Q13886 244 aaPredicted RBP15.21■□□□□ 0.03
SDC1-205ENST00000447124 A0A0B4J2A0 478 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 K7EQG2 157 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 NOL3O60936 208 aaKnown RBP15.2■□□□□ 0.02
SDC1-205ENST00000447124 SLC25A4P12235 298 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 ATF4P18848 351 aaPredicted RBP15.2■□□□□ 0.02
SDC1-205ENST00000447124 P2RY1P47900 373 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 OR1S2Q8NGQ3 325 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 NPIPB3Q92617 1050 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 TMEM231Q9H6L2 316 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 SHPKQ9UHJ6 478 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 RABAC1Q9UI14 185 aa15.2■□□□□ 0.02
SDC1-205ENST00000447124 NPY1RP25929 384 aa15.19■□□□□ 0.02
SDC1-205ENST00000447124 OR10J1P30954 320 aa15.19■□□□□ 0.02
SDC1-205ENST00000447124 YPEL3P61236 119 aaPredicted RBP15.19■□□□□ 0.02
SDC1-205ENST00000447124 CEMP1Q6PRD7 247 aaPredicted RBP15.19■□□□□ 0.02
SDC1-205ENST00000447124 Q8WTZ3 238 aa15.19■□□□□ 0.02
SDC1-205ENST00000447124 TRIM63Q969Q1 353 aa15.19■□□□□ 0.02
SDC1-205ENST00000447124 HSPB7Q9UBY9 170 aa15.19■□□□□ 0.02
SDC1-205ENST00000447124 CCR6P51684 374 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 SMCO1Q147U7 214 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 STXBP6Q8NFX7 210 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 GATAD1Q8WUU5 269 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 RARRES2Q99969 163 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 RBKSQ9H477 322 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 V9GYH0 126 aa15.18■□□□□ 0.02
SDC1-205ENST00000447124 GIG44P09565 113 aaPredicted RBP15.17■□□□□ 0.02
SDC1-205ENST00000447124 PYDC2Q56P42 97 aa15.17■□□□□ 0.02
SDC1-205ENST00000447124 C16orf54Q6UWD8 224 aa15.17■□□□□ 0.02
SDC1-205ENST00000447124 LGI3Q8N145 548 aa15.17■□□□□ 0.02
SDC1-205ENST00000447124 OR11H2Q8NH07 326 aa15.17■□□□□ 0.02
SDC1-205ENST00000447124 DCANP1Q8TF63 244 aa15.17■□□□□ 0.02
SDC1-205ENST00000447124 U3KQ87 197 aa15.17■□□□□ 0.02
SDC1-205ENST00000447124 SCGB2A1O75556 95 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 IFNA10P01566 189 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 USF2Q15853 346 aaPredicted RBP15.16■□□□□ 0.02
SDC1-205ENST00000447124 ZNF79Q15937 498 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 ETFRF1Q6IPR1 90 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 DTD1Q8TEA8 209 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 GLMPQ8WWB7 406 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 CACFD1Q9UGQ2 172 aa15.16■□□□□ 0.02
SDC1-205ENST00000447124 KNCNA6PVL3 124 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 PITX3O75364 302 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 CA1P00915 261 aaPredicted RBP15.15■□□□□ 0.02
SDC1-205ENST00000447124 HNRNPCP07910 306 aaKnown RBP eCLIP15.15■□□□□ 0.02
SDC1-205ENST00000447124 ZNF688P0C7X2 276 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 NOXA1Q86UR1 476 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 TOMM5Q8N4H5 51 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 LINC00476Q8WZB0 136 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 ACY3Q96HD9 319 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 GRAMD2BQ96HH9 432 aa15.15■□□□□ 0.02
SDC1-205ENST00000447124 NUPR2A6NF83 97 aa15.14■□□□□ 0.01
SDC1-205ENST00000447124 IL4P05112 153 aa15.14■□□□□ 0.01
SDC1-205ENST00000447124 TMED4Q7Z7H5 227 aa15.14■□□□□ 0.01
SDC1-205ENST00000447124 TRPT1Q86TN4 253 aaKnown RBP15.14■□□□□ 0.01
SDC1-205ENST00000447124 TMEM217Q8N7C4 229 aa15.14■□□□□ 0.01
SDC1-205ENST00000447124 NARS2Q96I59 477 aaKnown RBP15.14■□□□□ 0.01
SDC1-205ENST00000447124 KMT2AQ03164 3969 aa15.14■□□□□ 0.01
SDC1-205ENST00000447124 TOMM40O96008 361 aa15.13■□□□□ 0.01
SDC1-205ENST00000447124 RD3LP0DJH9 198 aa15.13■□□□□ 0.01
SDC1-205ENST00000447124 PSG1P11464 419 aa15.13■□□□□ 0.01
SDC1-205ENST00000447124 ANXA3P12429 323 aa15.13■□□□□ 0.01
SDC1-205ENST00000447124 CCDC190Q86UF4 302 aa15.13■□□□□ 0.01
SDC1-205ENST00000447124 STHQ8IWL8 128 aa15.13■□□□□ 0.01
SDC1-205ENST00000447124 PHLDA1Q8WV24 401 aaPredicted RBP15.13■□□□□ 0.01
SDC1-205ENST00000447124 RBM38Q9H0Z9 239 aaKnown RBP15.13■□□□□ 0.01
SDC1-205ENST00000447124 IGKV1D-37A0A075B6S9 117 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 DEFB4AO15263 64 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 BUB3O43684 328 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 FAUP35544 74 aaKnown RBP15.12■□□□□ 0.01
SDC1-205ENST00000447124 SRPXP78539 464 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 DHRS2Q13268 280 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 TMEM128Q5BJH2 165 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 OR1S1Q8NH92 325 aa15.12■□□□□ 0.01
SDC1-205ENST00000447124 CCDC160A6NGH7 325 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 LY6G6CO95867 125 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 IFNA4P05014 189 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 GPX4P36969 197 aaPredicted RBP15.11■□□□□ 0.01
SDC1-205ENST00000447124 AP3S2P59780 193 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 NANOS2P60321 138 aaKnown RBP15.11■□□□□ 0.01
SDC1-205ENST00000447124 GAMTQ14353 236 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 LRTM2Q8N967 370 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 OR51G1Q8NGK1 321 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 RAB40CQ96S21 281 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 VPS13DQ5THJ4 4388 aa15.11■□□□□ 0.01
SDC1-205ENST00000447124 HELTA6NFD8 242 aa15.1■□□□□ 0.01
SDC1-205ENST00000447124 SLC25A21Q9BQT8 299 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms