RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 XCL1P47992 114 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 HINT1P49773 126 aaPredicted RBP1.31□□□□□ -2.2
VPS41-207ENST00000439468 SNAP25P60880 206 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 RPS24P62847 133 aaKnown RBP1.31□□□□□ -2.2
VPS41-207ENST00000439468 COTL1Q14019 142 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 LGALS9BQ3B8N2 356 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 KRTAP13-4Q3LI77 160 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 WFDC11Q8NEX6 87 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 OR4X2Q8NGF9 303 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 HAVCR2Q8TDQ0 301 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 DDI1Q8WTU0 396 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 PACRGQ96M98 296 aaPredicted RBP1.31□□□□□ -2.2
VPS41-207ENST00000439468 Q9BRP9 147 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 POLR3HQ9Y535 204 aaPredicted RBP1.31□□□□□ -2.2
VPS41-207ENST00000439468 CR1P17927 2039 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 USF3Q68DE3 2245 aa1.31□□□□□ -2.2
VPS41-207ENST00000439468 MYOFQ9NZM1 2061 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 NUMA1Q14980 2115 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 MUC4Q99102 2169 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 TEX50A0A1B0GTY4 177 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 C5orf49A4QMS7 147 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 OR6C6A6NF89 314 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 RFPL4AA6NLU0 287 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 RFPL4AL1F8VTS6 287 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 C19orf84I3L1E1 186 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 S1PR2O95136 353 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 SMIM10L2AP0DMW4 78 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 SMIM10L2BP0DMW5 78 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 CD79BP40259 229 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 REG1BP48304 166 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 EMP2P54851 167 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 TAS2R30P59541 319 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 COMMD7Q86VX2 200 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 OTUD6BQ8N6M0 293 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 UBL4BQ8N7F7 174 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 ZNF283Q8N7M2 679 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 TMEM161BQ8NDZ6 487 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 CLDND2Q8NHS1 167 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 SPACA4Q8TDM5 124 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 DCANP1Q8TF63 244 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 RAB2BQ8WUD1 216 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 CMTM5Q96DZ9 223 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 ZNF625Q96I27 306 aaPredicted RBP1.3□□□□□ -2.2
VPS41-207ENST00000439468 ANKRD36BP1Q96IX9 119 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 SLC35G5Q96KT7 338 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 TIMM21Q9BVV7 248 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 NKX6-2Q9C056 277 aaPredicted RBP1.3□□□□□ -2.2
VPS41-207ENST00000439468 HDHD2Q9H0R4 259 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 MAP1LC3AQ9H492 121 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 BABAM2Q9NXR7 383 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 NUP210LQ5VU65 1888 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 CITO14578 2027 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 MYO7BQ6PIF6 2116 aa1.3□□□□□ -2.2
VPS41-207ENST00000439468 ANAPC1Q9H1A4 1944 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 MYH9P35579 1960 aaKnown RBP1.29□□□□□ -2.2
VPS41-207ENST00000439468 A0A1W2PQD3 144 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 TMEM235A6NFC5 223 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 J3QQQ9 107 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 CCL16O15467 120 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 MT-CO2P00403 227 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 DEFA4P12838 97 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 COX6B1P14854 86 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 CCR2P41597 374 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 CDC34P49427 236 aaPredicted RBP1.29□□□□□ -2.2
VPS41-207ENST00000439468 MAP3K7CLP57077 242 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 RPL26P61254 145 aaKnown RBP1.29□□□□□ -2.2
VPS41-207ENST00000439468 BTN3A2P78410 334 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 RSU1Q15404 277 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 FAM151BQ6UXP7 276 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 RASSF6Q6ZTQ3 369 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 GPHB5Q86YW7 130 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 TSTD1Q8NFU3 115 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 OR51T1Q8NGJ9 327 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 PPTC7Q8NI37 304 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 C12orf43Q96C57 262 aaKnown RBP1.29□□□□□ -2.2
VPS41-207ENST00000439468 MS4A6EQ96DS6 147 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 TCEAL4Q96EI5 215 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 CPNE2Q96FN4 548 aaPredicted RBP1.29□□□□□ -2.2
VPS41-207ENST00000439468 HRASLSQ9HDD0 168 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 PRO2289Q9P1D8 64 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 DKKL1Q9UK85 242 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 RPL26L1Q9UNX3 145 aaKnown RBP1.29□□□□□ -2.2
VPS41-207ENST00000439468 COQ4Q9Y3A0 265 aa1.29□□□□□ -2.2
VPS41-207ENST00000439468 A0A087WUU8 490 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 ARRDC5A6NEK1 342 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 ZNF860A6NHJ4 632 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 EVPLLA8MZ36 301 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 H0Y980 276 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 M0QZ92 97 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 TXNDC9O14530 226 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 PFDN6O15212 129 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 CCL1P22362 96 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 RPL12P30050 165 aaKnown RBP1.28□□□□□ -2.2
VPS41-207ENST00000439468 MAGEA2P43356 314 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 GABRA2P47869 451 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 TBPL1P62380 186 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 GNA12Q03113 381 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 EBPQ15125 230 aaKnown RBP1.28□□□□□ -2.2
VPS41-207ENST00000439468 CDKL4Q5MAI5 379 aa1.28□□□□□ -2.2
VPS41-207ENST00000439468 LHFPL1Q86WI0 220 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms