RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 IGFL2Q6UWQ7 119 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 LINC00173Q6ZV60 143 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 FAM222BQ8WU58 562 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 URB1-AS1Q96HZ7 61 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 TMEM208Q9BTX3 173 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 MCRIP2Q9BUT9 160 aaKnown RBP5.79□□□□□ -1.48
COL28A1-202ENST00000430711 PLEKHA3Q9HB20 300 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 NRN1Q9NPD7 142 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 SH3BGRL2Q9UJC5 107 aa5.79□□□□□ -1.48
COL28A1-202ENST00000430711 MALRD1Q5VYJ5 2156 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 OR5G3P0C626 314 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 C3orf79P0CE67 100 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 ESDP10768 282 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 CTRLP40313 264 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 CX3CL1P78423 397 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 MMDQ15546 238 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 ZNF788Q6ZQV5 615 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 SLC25A48Q6ZT89 311 aaKnown RBP5.78□□□□□ -1.48
COL28A1-202ENST00000430711 OR5AU1Q8NGC0 362 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 MBD6Q96DN6 1003 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 SLC25A33Q9BSK2 321 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 SAMD10Q9BYL1 202 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 SERTAD4Q9NUC0 356 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 CTSZQ9UBR2 303 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 RPUSD1Q9UJJ7 312 aaKnown RBP5.78□□□□□ -1.48
COL28A1-202ENST00000430711 RPH3ALQ9UNE2 315 aa5.78□□□□□ -1.48
COL28A1-202ENST00000430711 MBD3L4A6NDZ8 208 aaPredicted RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 MBD3L3A6NE82 208 aaPredicted RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 MBD3L5A6NJ08 208 aaPredicted RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 H0YJW9 148 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 M0R143 59 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TOX4O94842 621 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 NTF3P20783 257 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 BRS3P32247 399 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 CFHR2P36980 270 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 AMTP48728 403 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 RPL8P62917 257 aaKnown RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 UBE2L3P68036 154 aaKnown RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 LCE2AQ5TA79 106 aaPredicted RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 HCP5Q6MZN7 132 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 ERASQ7Z444 233 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 STPG4Q8N801 248 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 MBD3L2Q8NHZ7 208 aaPredicted RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 NPIPB3Q92617 1050 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 BTF3L4Q96K17 158 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 HARBI1Q96MB7 349 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 LPAR2Q9HBW0 351 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TLN1Q9Y490 2541 aaKnown RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 NBASA2RRP1 2371 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 MAP1AP78559 2803 aaPredicted RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TRAV17A0A0B4J275 112 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 NDUFB8O95169 186 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 IGLV2-23P01705 113 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 GLRXP35754 106 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TPPP2P59282 170 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 CD69Q07108 199 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 POU2AF1Q16633 256 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 IBA57Q5T440 356 aaKnown RBP5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TMEM200BQ69YZ2 307 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 SPACA3Q8IXA5 215 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TSKUQ8WUA8 353 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 ST6GALNAC6Q969X2 333 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 SARAFQ96BY9 339 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 C7orf69Q9H7B7 122 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 NDUFA4L2Q9NRX3 87 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 RNF7Q9UBF6 113 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 HECTD1Q9ULT8 2610 aa5.77□□□□□ -1.49
COL28A1-202ENST00000430711 TEP1Q99973 2627 aaKnown RBP5.76□□□□□ -1.49
COL28A1-202ENST00000430711 TRAV8-1A0A0A6YYK1 113 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 A0A1W2PPI3 338 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 SMIM27A0A1W2PRY6 76 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 DIRC3C9JPN6 131 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 LYNX1G3V0Z9 82 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 LYNX1P0DP58 116 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 PPOXP50336 477 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 Q0VG73 95 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 TNXAQ16473 311 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 KRTAP21-3Q3LHN1 58 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 EBLN2Q6P2I7 272 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 TRAT1Q6PIZ9 186 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 ZNF329Q86UD4 541 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 C18orf32Q8TCD1 76 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 BLNKQ8WV28 456 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 FXYD5Q96DB9 178 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 C20orf144Q9BQM9 153 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 ZNF430Q9H8G1 570 aaPredicted RBP5.76□□□□□ -1.49
COL28A1-202ENST00000430711 ENY2Q9NPA8 101 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 CLEC5AQ9NY25 188 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 DPRXA6NFQ7 191 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 SLC25A17O43808 307 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 ZNF253O75346 499 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 CD40P25942 277 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 CAMPP49913 170 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 RANP62826 216 aaKnown RBP5.76□□□□□ -1.49
COL28A1-202ENST00000430711 RPP30P78346 268 aaKnown RBP5.76□□□□□ -1.49
COL28A1-202ENST00000430711 PRR30Q53SZ7 412 aaPredicted RBP5.76□□□□□ -1.49
COL28A1-202ENST00000430711 ZNF833PQ6ZTB9 187 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 PIP4P1Q86T03 277 aa5.76□□□□□ -1.49
COL28A1-202ENST00000430711 BCL6BQ8N143 479 aaPredicted RBP5.76□□□□□ -1.49
COL28A1-202ENST00000430711 NUP35Q8NFH5 326 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms