RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 DPM2O94777 84 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 SOD1P00441 154 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 IGKV1-17P01599 117 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 APOC1P02654 83 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 PSMB8P28062 276 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 MYL5Q02045 173 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 WHAMMP3Q1A5X7 153 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 HRCT1Q6UXD1 115 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 C2orf91Q6ZV80 131 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 LRRC18Q8N456 261 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 TMEM133Q9H2Q1 129 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 POPDC3Q9HBV1 291 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 MARCOQ9UEW3 520 aaPredicted RBP2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 ADAMTSL1Q8N6G6 1762 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 CCDC171Q6TFL3 1326 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 NLRC5Q86WI3 1866 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 OVOS2A0A0G2JMS6 1433 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 C9JAW5 83 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 M0R378 163 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 TNFSF15O95150 251 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 OR2H2O95918 312 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 TCL1BO95988 128 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 ZNF14P17017 642 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 SDC2P34741 201 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 EIF2B2P49770 351 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 INSL3P51460 131 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 OR2T10Q8NGZ9 312 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 AP1S3Q96PC3 154 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 OR8D2Q9GZM6 311 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 DUSP21Q9H596 190 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 NAT8Q9UHE5 227 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 NAT8BQ9UHF3 227 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 HIGD1AQ9Y241 93 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 TIMM9Q9Y5J7 89 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 DOCK6Q96HP0 2047 aa2.97□□□□□ -1.93
CCDC88A-206ENST00000430086 ATG2BQ96BY7 2078 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 MEIS3P1A6NDR6 274 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 GGTLC3B5MD39 225 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 TMEM256-PLSCR3K7ERE1 68 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 M0R2Z0 102 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 SMIM24O75264 130 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 C1QCP02747 245 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 EVI2AP22794 236 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 COL8A2P25067 703 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 FOXA1P55317 472 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 NDUFA5Q16718 116 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 VMA21Q3ZAQ7 101 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 C22orf39Q6P5X5 142 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 DPPA3Q6W0C5 159 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 RPP25LQ8N5L8 163 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 TSTD1Q8NFU3 115 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 STAG3L4Q8TBR4 150 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 FGF13Q92913 245 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 IMMP2LQ96T52 175 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 ADAT1Q9BUB4 502 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 EPDR1Q9UM22 224 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 RFX7Q2KHR2 1363 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 NCAPD3P42695 1498 aa2.96□□□□□ -1.94
CCDC88A-206ENST00000430086 NUP205Q92621 2012 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 CD109Q6YHK3 1445 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 C17orf98A8MV24 154 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 MIF4GDA9UHW6 222 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 H3BT86 120 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 H7BYZ3 331 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 J3QR89 54 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 PSCAO43653 123 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 SYNGR2O43760 224 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 FKBP2P26885 142 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 EVX1P49640 407 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 DYNLT3P51808 116 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 SIGLECL1Q8N7X8 197 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 DCANP1Q8TF63 244 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 TMEM106AQ96A25 262 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 MAGOHBQ96A72 148 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 ZNF471Q9BX82 626 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 MRPL32Q9BYC8 188 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 OTORQ9NRC9 128 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 CALML5Q9NZT1 146 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 U3KQ87 197 aa2.95□□□□□ -1.94
CCDC88A-206ENST00000430086 SPATA31E1Q6ZUB1 1445 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 A0A096LPI6 279 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 A0A0D9SEW6 157 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 A0A0D9SG52 128 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 A0A1B0GU33 70 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 C7orf71A4D174 169 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 IFNA4P05014 189 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 FABP2P12104 132 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 CCL5P13501 91 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 AQP4P55087 323 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 RHOGP84095 191 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 MSMO1Q15800 293 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 FAM229BQ4G0N7 80 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 KHDC3LQ587J8 217 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 DNLZQ5SXM8 178 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 KPRPQ5T749 579 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 EIF5AL1Q6IS14 154 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 C4orf22Q6V702 233 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 LHFPL1Q86WI0 220 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms