RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TMEM8BA6NDV4 472 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 PRCDQ00LT1 54 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 CD300EQ496F6 205 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-206ENST00000429895 TMEM200BQ69YZ2 307 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 LOC102723996A0A087X1L8 192 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 OVOL1O14753 267 aa12.74□□□□□ -0.37
PTPRF-206ENST00000429895 IGKV1-9A0A0C4DH69 117 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 H3BUX3 64 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 DPM2O94777 84 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 ZFP36L1Q07352 338 aaKnown RBP12.73□□□□□ -0.37
PTPRF-206ENST00000429895 C1QL4Q86Z23 238 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 UBE2E2Q96LR5 201 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 DUTP33316 252 aaKnown RBP12.73□□□□□ -0.37
PTPRF-206ENST00000429895 CCL20P78556 96 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 OR2K2Q8NGT1 345 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 SCN4AP35499 1836 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 IGLV3-12A0A075B6K2 115 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 LILRA1O75019 489 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 LINC00271P0C7V0 271 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 NRN1Q9NPD7 142 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 CABIN1Q9Y6J0 2220 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 MYOFQ9NZM1 2061 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 CDK2AP2O75956 126 aa12.73□□□□□ -0.37
PTPRF-206ENST00000429895 MBNL3Q9NUK0 354 aaKnown RBP12.73□□□□□ -0.37
PTPRF-206ENST00000429895 TMEM86BQ8N661 226 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 DMRTA1Q5VZB9 504 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 FNDC4Q9H6D8 234 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-206ENST00000429895 TBX6O95947 436 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-206ENST00000429895 FOXL1Q12952 345 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 EFNB3Q15768 340 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 LCNL1Q6ZST4 164 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 ZNF329Q86UD4 541 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 GATD1Q8NB37 220 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 ZNF319Q9P2F9 582 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 RNF222A6NCQ9 220 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 GHRHP01286 108 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 KLHL30-AS1Q8NEE0 82 aa12.72□□□□□ -0.37
PTPRF-206ENST00000429895 ZNF474Q6S9Z5 364 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-206ENST00000429895 JPT2Q9H910 190 aa12.71□□□□□ -0.37
PTPRF-206ENST00000429895 PMS2P5A8MQ11 134 aa12.71□□□□□ -0.37
PTPRF-206ENST00000429895 NIT1Q86X76 327 aa12.71□□□□□ -0.37
PTPRF-206ENST00000429895 LINC00518Q8N0U6 118 aa12.71□□□□□ -0.37
PTPRF-206ENST00000429895 EXOC3-AS1Q8N2X6 119 aa12.71□□□□□ -0.37
PTPRF-206ENST00000429895 PAQR4Q8N4S7 273 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-206ENST00000429895 HEATR5BQ9P2D3 2071 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 VSIRQ9H7M9 311 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 SPTBP11277 2137 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 NCR2O95944 276 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 CFHR1Q03591 330 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 SCRT1Q9BWW7 348 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 CRIM1Q9NZV1 1036 aa12.71□□□□□ -0.38
PTPRF-206ENST00000429895 A0A0A6YYD4 124 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 HOXA3O43365 443 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-206ENST00000429895 IGKCP01834 107 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 SRSF6Q13247 344 aaKnown RBP12.7□□□□□ -0.38
PTPRF-206ENST00000429895 ORMDL2Q53FV1 153 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 TPTE2P1Q5T6R2 138 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 IGHV1-3A0A0C4DH29 117 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 FCN3O75636 299 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 IGHV1-8P0DP01 117 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 KLF17Q5JT82 389 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-206ENST00000429895 UNQ6494/PRO21346Q6UXR6 183 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 DERL1Q9BUN8 251 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 SEC16AO15027 2179 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 IGFL4Q6B9Z1 124 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 SLC25A2Q9BXI2 301 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 PRDM13Q9H4Q3 707 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 GGTLC3B5MD39 225 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 ZNF876PQ49A33 203 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 C3orf56Q8N813 242 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 OCC1Q8TAD7 63 aa12.7□□□□□ -0.38
PTPRF-206ENST00000429895 B4DSR2 109 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 PLNP26678 52 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 SRSF3P84103 164 aaKnown RBP12.69□□□□□ -0.38
PTPRF-206ENST00000429895 PIP4P2Q8N4L2 257 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 COL5A3P25940 1745 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-206ENST00000429895 TRAV9-1A0A075B6T8 112 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 A0A0G2JNJ9 132 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 SPATA31B1PQ5VZV4 182 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 MBD3L1Q8WWY6 194 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 Q9UFV3 132 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 CARHSP1Q9Y2V2 147 aaKnown RBP12.69□□□□□ -0.38
PTPRF-206ENST00000429895 IGKV1D-8A0A087WSZ0 117 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 LY6HO94772 140 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 NAPSAO96009 420 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 RNF126Q9BV68 326 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 CCL1P22362 96 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 ANKRD36A6QL64 1941 aa12.69□□□□□ -0.38
PTPRF-206ENST00000429895 DICER1Q9UPY3 1922 aaKnown RBP12.68□□□□□ -0.38
PTPRF-206ENST00000429895 PAX4O43316 350 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 TIMP3P35625 211 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 TMEM249Q2WGJ8 235 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 TMEM178BH3BS89 294 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 CLDN16Q9Y5I7 305 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 SRRM4A7MD48 611 aaKnown RBP12.68□□□□□ -0.38
PTPRF-206ENST00000429895 NTN3O00634 580 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-206ENST00000429895 PSG1P11464 419 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 CSRP3P50461 194 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 MTURNQ8N3F0 131 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 FLVCR1-AS1Q8TAF5 88 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms