RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TBC1D24Q9ULP9 559 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 DNAH6Q9C0G6 4158 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 TRAV10A0A0B4J240 114 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 GABARAPO95166 117 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 IL4P05112 153 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 GIG44P09565 113 aaPredicted RBP10.53□□□□□ -0.72
SDC1-204ENST00000429035 IGLC1P0CG04 106 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 RPL5P46777 297 aaKnown RBP10.53□□□□□ -0.72
SDC1-204ENST00000429035 TCTAP57738 103 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 TMEM268Q5VZI3 342 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 ZNF767PQ75MW2 155 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 FAM219AQ8IW50 185 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 LHFPL5Q8TAF8 219 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 Q8WTZ3 238 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 RBPMSQ93062 196 aaKnown RBP10.53□□□□□ -0.72
SDC1-204ENST00000429035 ACY3Q96HD9 319 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.53□□□□□ -0.72
SDC1-204ENST00000429035 APLNQ9ULZ1 77 aa10.53□□□□□ -0.72
SDC1-204ENST00000429035 IGHV4-4A0A075B6R2 117 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 ELOA3CA0A087WX78 387 aaPredicted RBP10.52□□□□□ -0.73
SDC1-204ENST00000429035 DISC1C4P0D8 188 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 B3GALNT1O75752 331 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 CD74P04233 296 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 NPY1RP25929 384 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 DHODHQ02127 395 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 MEF2DQ14814 521 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 BSXQ3C1V8 233 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 GPR107Q5VW38 600 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 PRSS54Q6PEW0 395 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 C15orf40Q8WUR7 153 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 GLMPQ8WWB7 406 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 GPR146Q96CH1 333 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 TMEM222Q9H0R3 208 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 HRH4Q9H3N8 390 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 X6R8D5 127 aa10.52□□□□□ -0.73
SDC1-204ENST00000429035 VPS13DQ5THJ4 4388 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 ZNF705EA8MWA4 302 aaPredicted RBP10.51□□□□□ -0.73
SDC1-204ENST00000429035 GABARAPH6UMI1 98 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 SLC25A4P12235 298 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 SNRPD3P62318 126 aaKnown RBP10.51□□□□□ -0.73
SDC1-204ENST00000429035 USF2Q15853 346 aaPredicted RBP10.51□□□□□ -0.73
SDC1-204ENST00000429035 C2orf83Q53S99 150 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 C16orf54Q6UWD8 224 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 SELENOHQ8IZQ5 122 aaKnown RBP10.51□□□□□ -0.73
SDC1-204ENST00000429035 OR52E5Q8NH55 327 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 RNASEH2CQ8TDP1 164 aaKnown RBP10.51□□□□□ -0.73
SDC1-204ENST00000429035 PRR13Q9NZ81 148 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 CELA1Q9UNI1 258 aa10.51□□□□□ -0.73
SDC1-204ENST00000429035 CDS2O95674 445 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 IL18Q14116 193 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 CTF1Q16619 201 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 ETFRF1Q6IPR1 90 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 SIGLEC15Q6ZMC9 328 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 OR4C16Q8NGL9 310 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 GLYATL2Q8WU03 294 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 NPIPB3Q92617 1050 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 RAB40CQ96S21 281 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 PBDC1Q9BVG4 233 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 KRTAP17-1Q9BYP8 105 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 XCL2Q9UBD3 114 aa10.5□□□□□ -0.73
SDC1-204ENST00000429035 CRYM-AS1A6NIL9 109 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 FAM90A26D6RGX4 464 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 GSTZ1O43708 216 aaPredicted RBP10.49□□□□□ -0.73
SDC1-204ENST00000429035 IFNA10P01566 189 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 IGKV3-20P01619 116 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 AKAIN1P0CW23 69 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 SMIM18P0DKX4 95 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 AP2S1P53680 142 aaPredicted RBP10.49□□□□□ -0.73
SDC1-204ENST00000429035 YPEL3P61236 119 aaPredicted RBP10.49□□□□□ -0.73
SDC1-204ENST00000429035 NUTF2P61970 127 aaKnown RBP10.49□□□□□ -0.73
SDC1-204ENST00000429035 RTBDNQ9BSG5 229 aaPredicted RBP10.49□□□□□ -0.73
SDC1-204ENST00000429035 MIXL1Q9H2W2 232 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 NRN1Q9NPD7 142 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 U3KQE9 123 aa10.49□□□□□ -0.73
SDC1-204ENST00000429035 DEFB131BA0A096LNP1 70 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 TOMM40O96008 361 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 RD3LP0DJH9 198 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 SULT1A3P0DMM9 295 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 SULT1A4P0DMN0 295 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 FXYD7P58549 80 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 MRPS10P82664 201 aaKnown RBP10.48□□□□□ -0.73
SDC1-204ENST00000429035 OR51G1Q8NGK1 321 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 C1QTNF4Q9BXJ3 329 aa10.48□□□□□ -0.73
SDC1-204ENST00000429035 HECTD4Q9Y4D8 3996 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 IGHV3OR16-12A0A075B7B8 117 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 CTDSP2O14595 271 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 EMP1P54849 157 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 SSBP1Q04837 148 aaKnown RBP10.47□□□□□ -0.73
SDC1-204ENST00000429035 SURF2Q15527 256 aaPredicted RBP10.47□□□□□ -0.73
SDC1-204ENST00000429035 AARDQ4LEZ3 155 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 NOXA1Q86UR1 476 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 CLVS1Q8IUQ0 354 aaPredicted RBP10.47□□□□□ -0.73
SDC1-204ENST00000429035 CSNK1G2-AS1Q8NCQ2 148 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 TMEM170AQ8WVE7 144 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 SMIM4Q8WVI0 70 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 PRRT1Q99946 306 aa10.47□□□□□ -0.73
SDC1-204ENST00000429035 ZFP92A6NM28 416 aa10.46□□□□□ -0.73
SDC1-204ENST00000429035 PSG1P11464 419 aa10.46□□□□□ -0.73
SDC1-204ENST00000429035 DEFB1P60022 68 aa10.46□□□□□ -0.73
SDC1-204ENST00000429035 LYZP61626 148 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms