RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 REG1BP48304 166 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 TDRG1Q3Y452 100 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 WDR73Q6P4I2 378 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 OR5AU1Q8NGC0 362 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 OR4C13Q8NGP0 309 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 OR4A5Q8NH83 315 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 ZNF596Q8TC21 504 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 RNF2Q99496 336 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 FNDC4Q9H6D8 234 aaPredicted RBP11.53□□□□□ -0.56
LIG1-202ENST00000427526 GNB4Q9HAV0 340 aa11.53□□□□□ -0.56
LIG1-202ENST00000427526 TNFRSF13BO14836 293 aaPredicted RBP11.52□□□□□ -0.56
LIG1-202ENST00000427526 SPINK4O60575 86 aa11.52□□□□□ -0.56
LIG1-202ENST00000427526 DIAPH2-AS1Q14236 149 aa11.52□□□□□ -0.56
LIG1-202ENST00000427526 IBA57Q5T440 356 aaKnown RBP11.52□□□□□ -0.56
LIG1-202ENST00000427526 NAT8BQ9UHF3 227 aa11.52□□□□□ -0.56
LIG1-202ENST00000427526 A0A1W2PN81 502 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 IGLV2-23P01705 113 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 COX19Q49B96 90 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 PATE2Q6UY27 113 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 ST6GALNAC6Q969X2 333 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 CDC42EP3Q9UKI2 254 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 PKDREJQ9NTG1 2253 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 IGKV1D-37A0A075B6S9 117 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 FSTL3O95633 263 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 CDKN1AP38936 164 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 RPL19P84098 196 aaKnown RBP11.52□□□□□ -0.57
LIG1-202ENST00000427526 FAM71F2Q6NXP2 309 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 PDPNQ86YL7 162 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 NBASA2RRP1 2371 aa11.52□□□□□ -0.57
LIG1-202ENST00000427526 TMEM178BH3BS89 294 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 GPX1P07203 203 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 COMPP49747 757 aaPredicted RBP11.51□□□□□ -0.57
LIG1-202ENST00000427526 UBE2L3P68036 154 aaKnown RBP11.51□□□□□ -0.57
LIG1-202ENST00000427526 SLC35B1P78383 322 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 TOMM20LQ6UXN7 152 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 LINC00311Q8N616 119 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 C8orf31Q8N9H6 132 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 VSTM2AQ8TAG5 236 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 LINC00479Q96M42 142 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 OR10J3Q5JRS4 329 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 TMEM186Q96B77 213 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 C20orf144Q9BQM9 153 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 RPH3ALQ9UNE2 315 aa11.51□□□□□ -0.57
LIG1-202ENST00000427526 CHD8Q9HCK8 2581 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 PPIAL4EA0A075B759 164 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 PPIAL4DF5H284 164 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 PPIAL4FP0DN26 164 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 MGST1P10620 155 aaKnown RBP11.5□□□□□ -0.57
LIG1-202ENST00000427526 TCL1AP56279 114 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 C10orf55Q5SWW7 151 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 LINC01560Q8TB33 94 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 NPIPB3Q92617 1050 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 ZNF430Q9H8G1 570 aaPredicted RBP11.5□□□□□ -0.57
LIG1-202ENST00000427526 ZNF355PQ9NSJ1 428 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 PPIAL4AQ9Y536 164 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 NCOR2Q9Y618 2525 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 TCRBV4S1A1TA0A5B7 111 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 FAM90A27PA6NNH2 459 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 SHISA9B4DS77 424 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 PYYP10082 97 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 GRNP28799 593 aaKnown RBP11.5□□□□□ -0.57
LIG1-202ENST00000427526 LYPD2Q6UXB3 125 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 THAP8Q8NA92 274 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 NUDT10Q8NFP7 164 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 OR10X1Q8NGY0 326 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 FAM168AQ92567 244 aa11.5□□□□□ -0.57
LIG1-202ENST00000427526 MRPL36Q9P0J6 103 aaKnown RBP11.5□□□□□ -0.57
LIG1-202ENST00000427526 AMMECR1Q9Y4X0 333 aaPredicted RBP11.5□□□□□ -0.57
LIG1-202ENST00000427526 E7EQL1 145 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 AMY1AP04745 511 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 BRS3P32247 399 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 KLRB1Q12918 225 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 MRGPRG-AS1Q2M3A8 158 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 KIAA1644Q3SXP7 199 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 C10orf113Q5VZT2 155 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 SAMD10Q9BYL1 202 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 SAP30LQ9HAJ7 183 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 RNF114Q9Y508 228 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 BMPR1BO00238 502 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 CCL21O00585 134 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 COX7A2P2O60397 106 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 CA7P43166 264 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 ZNF137PP52743 207 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 ZNF329Q86UD4 541 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 OR1L4Q8NGR5 311 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 MBD6Q96DN6 1003 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 PAXXQ9BUH6 204 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 IZUMO1RA6ND01 250 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 S100A7P31151 101 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 DLX6P56179 175 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 LEMD1Q68G75 181 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 NHLRC2Q8NBF2 726 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 FXYD5Q96DB9 178 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 FBXL7Q9UJT9 491 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 WASHC3Q9Y3C0 194 aa11.49□□□□□ -0.57
LIG1-202ENST00000427526 PLAUP00749 431 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 CA1P00915 261 aaPredicted RBP11.48□□□□□ -0.57
LIG1-202ENST00000427526 IGHV3-48P01763 117 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 HLA-DQA1P01909 254 aa11.48□□□□□ -0.57
LIG1-202ENST00000427526 SUB1P53999 127 aaKnown RBP eCLIP11.48□□□□□ -0.571e-16■■■■■ 45.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms