RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DHODHQ02127 395 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 PSMG4Q5JS54 123 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 TMEM268Q5VZI3 342 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 PRSS54Q6PEW0 395 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 Q6ZTC4 211 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 AP3S1Q92572 193 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 NAA60Q9H7X0 242 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.39□□□□□ -1.07
USP4-204ENST00000416417 APLNQ9ULZ1 77 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 X6R8D5 127 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 AGRNO00468 2067 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 CDS2O95674 445 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 OR10J1P30954 320 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 DEFB1P60022 68 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 SPCS2Q15005 226 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 USF2Q15853 346 aaPredicted RBP8.38□□□□□ -1.07
USP4-204ENST00000416417 C16orf54Q6UWD8 224 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 OR4C16Q8NGL9 310 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 GLMPQ8WWB7 406 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 NPIPB3Q92617 1050 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 ACY3Q96HD9 319 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 RAB40CQ96S21 281 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 SCRT1Q9BWW7 348 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 CELA1Q9UNI1 258 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 C14orf166Q9Y224 244 aaKnown RBP8.38□□□□□ -1.07
USP4-204ENST00000416417 U3KQE9 123 aa8.38□□□□□ -1.07
USP4-204ENST00000416417 HERC2O95714 4834 aa8.37□□□□□ -1.07
USP4-204ENST00000416417 GABARAPH6UMI1 98 aa8.37□□□□□ -1.07
USP4-204ENST00000416417 HNRNPCP07910 306 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP4-204ENST00000416417 HTR2BP41595 481 aa8.37□□□□□ -1.07
USP4-204ENST00000416417 Q8WTZ3 238 aa8.37□□□□□ -1.07
USP4-204ENST00000416417 RBPMSQ93062 196 aaKnown RBP8.37□□□□□ -1.07
USP4-204ENST00000416417 GRAMD2BQ96HH9 432 aa8.37□□□□□ -1.07
USP4-204ENST00000416417 NARS2Q96I59 477 aaKnown RBP8.37□□□□□ -1.07
USP4-204ENST00000416417 TRAV30A0A087WSZ9 112 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 RPS10-NUDT3A0A1W2PQS6 291 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 HELTA6NFD8 242 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 CRYM-AS1A6NIL9 109 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 IL4P05112 153 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 SPP1P10451 314 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 AARDQ4LEZ3 155 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 C2orf83Q53S99 150 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 MORN3Q6PF18 240 aaPredicted RBP8.36□□□□□ -1.07
USP4-204ENST00000416417 FAM219AQ8IW50 185 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 CSNK1G2-AS1Q8NCQ2 148 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 SLC24A4Q8NFF2 622 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 OR51S1Q8NGJ8 323 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 OR1S2Q8NGQ3 325 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 OR52E5Q8NH55 327 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 XCL2Q9UBD3 114 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 GPR132Q9UNW8 380 aa8.36□□□□□ -1.07
USP4-204ENST00000416417 ZNF705EA8MWA4 302 aaPredicted RBP8.35□□□□□ -1.07
USP4-204ENST00000416417 DISC1C4P0D8 188 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 SCGB2A1O75556 95 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 IGKV3-20P01619 116 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 MIFP14174 115 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 NPY1RP25929 384 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 FXYD7P58549 80 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 OR51G1Q8NGK1 321 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 TBC1D24Q9ULP9 559 aa8.35□□□□□ -1.07
USP4-204ENST00000416417 IGHV4-4A0A075B6R2 117 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 FAM90A26D6RGX4 464 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 IFNA10P01566 189 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 AKAIN1P0CW23 69 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 SLC25A4P12235 298 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 YPEL3P61236 119 aaPredicted RBP8.34□□□□□ -1.07
USP4-204ENST00000416417 IL18Q14116 193 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 RNASEH2CQ8TDP1 164 aaKnown RBP8.34□□□□□ -1.07
USP4-204ENST00000416417 SMIM4Q8WVI0 70 aa8.34□□□□□ -1.07
USP4-204ENST00000416417 TRAV10A0A0B4J240 114 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 C11orf94C9JXX5 98 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 B3GALNT1O75752 331 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 RD3LP0DJH9 198 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 PSG1P11464 419 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 C12orf74Q32Q52 190 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 GDF5OSQ5U4N7 250 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 SIGLEC15Q6ZMC9 328 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 LYZL2Q7Z4W2 148 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 CLVS1Q8IUQ0 354 aaPredicted RBP8.34□□□□□ -1.08
USP4-204ENST00000416417 C15orf40Q8WUR7 153 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 DIRAS2Q96HU8 199 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 PBDC1Q9BVG4 233 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 HRH4Q9H3N8 390 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 RBKSQ9H477 322 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 TMEM56-RWDD3S4R434 201 aa8.34□□□□□ -1.08
USP4-204ENST00000416417 HECTD4Q9Y4D8 3996 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 H3BMM0 161 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 BUB3O43684 328 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 TOMM40O96008 361 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 SULT1A3P0DMM9 295 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 SULT1A4P0DMN0 295 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 AKR1C4P17516 323 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 ALDH3B2P48448 385 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 EIF2B2P49770 351 aaKnown RBP8.33□□□□□ -1.08
USP4-204ENST00000416417 ZNF90Q03938 601 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 NMSQ5H8A3 153 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 GPR141Q7Z602 305 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 NRN1Q9NPD7 142 aa8.33□□□□□ -1.08
USP4-204ENST00000416417 DNAH6Q9C0G6 4158 aa8.32□□□□□ -1.08
USP4-204ENST00000416417 IGHV3OR16-12A0A075B7B8 117 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms