RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TXNDC17Q9BRA2 123 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 SLC25A33Q9BSK2 321 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 TMPRSS5Q9H3S3 457 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 NAT8Q9UHE5 227 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 PRELID1Q9Y255 219 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 SETD2Q9BYW2 2564 aaPredicted RBP10.63□□□□□ -0.71
LIMS1-204ENST00000409441 ZNF727A8MUV8 499 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 HMGB3O15347 200 aaKnown RBP10.62□□□□□ -0.71
LIMS1-204ENST00000409441 RNASE2P10153 161 aaKnown RBP10.62□□□□□ -0.71
LIMS1-204ENST00000409441 MYOD1P15172 320 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 RAB5AP20339 215 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 ERHP84090 104 aaKnown RBP10.62□□□□□ -0.71
LIMS1-204ENST00000409441 MMDQ15546 238 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 VMA21Q3ZAQ7 101 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 MIC13Q5XKP0 118 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 CYP2G1PQ6ZSU1 146 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 C1RLQ9NZP8 487 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 CXorf1O96002 111 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 RNASE1P07998 156 aaKnown RBP10.62□□□□□ -0.71
LIMS1-204ENST00000409441 STAG3L2P0CL84 134 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 STAG3L3P0CL85 134 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 GPX4P36969 197 aaPredicted RBP10.62□□□□□ -0.71
LIMS1-204ENST00000409441 B2MP61769 119 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 PSG5Q15238 335 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 C16orf82Q7Z2V1 217 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 TMEM144Q7Z5S9 345 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 FAM24BQ8N5W8 94 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 NPBQ8NG41 125 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 CTDSP1Q9GZU7 261 aa10.62□□□□□ -0.71
LIMS1-204ENST00000409441 JMJD1CQ15652 2540 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 FAM181BA6NEQ2 426 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 NBR2O15453 112 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 PDE6DO43924 150 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 IGLV2-23P01705 113 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 RHOBP62745 196 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 PRR20EP86478 221 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 PRR20CP86479 221 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 PRR20DP86480 221 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 PRR20BP86481 221 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 PRR20AP86496 221 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 SRSF2Q01130 221 aaKnown RBP10.61□□□□□ -0.71
LIMS1-204ENST00000409441 C1QL4Q86Z23 238 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 IQCF2Q8IXL9 164 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 CACNG8Q8WXS5 425 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 SLC35E1Q96K37 410 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 SMIM7Q9BQ49 75 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 MOB4Q9Y3A3 225 aa10.61□□□□□ -0.71
LIMS1-204ENST00000409441 F6UZH7 168 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 M0QZK8 103 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 SLC25A17O43808 307 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 PAGE4O60829 102 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 EIF3GO75821 320 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIMS1-204ENST00000409441 AMY1AP04745 511 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 RND2P52198 227 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 SUB1P53999 127 aaKnown RBP eCLIP10.6□□□□□ -0.715e-7■■■■■ 33
LIMS1-204ENST00000409441 BLCAPP62952 87 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 CD69Q07108 199 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 TMEM241Q24JQ0 296 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 MRPL41Q8IXM3 137 aaKnown RBP10.6□□□□□ -0.71
LIMS1-204ENST00000409441 STPG3Q8N7X2 389 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 Q8N9W7 124 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 TEX45Q8NA69 505 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 OR4F5Q8NH21 305 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 OR4F4Q96R69 305 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 FBXL15Q9H469 300 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 METTL1Q9UBP6 276 aaKnown RBP10.6□□□□□ -0.71
LIMS1-204ENST00000409441 SLC45A2Q9UMX9 530 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 ZFHX3Q15911 3703 aa10.6□□□□□ -0.71
LIMS1-204ENST00000409441 C11orf94C9JXX5 98 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 TSPAN9O75954 239 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 NDUFA3O95167 84 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 CRYGBP07316 175 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 C5orf64Q2M2E5 130 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 GCSAMLQ5JQS6 135 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 C5orf56Q8N8D9 126 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 RNASEH2CQ8TDP1 164 aaKnown RBP10.59□□□□□ -0.71
LIMS1-204ENST00000409441 RASL11BQ9BPW5 248 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 C19orf24Q9BVV8 132 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 PARLQ9H300 379 aa10.59□□□□□ -0.71
LIMS1-204ENST00000409441 SAV1Q9H4B6 383 aaPredicted RBP10.59□□□□□ -0.71
LIMS1-204ENST00000409441 NF1P21359 2839 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 SH2D7A6NKC9 451 aaPredicted RBP10.58□□□□□ -0.72
LIMS1-204ENST00000409441 FCN1O00602 326 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 MT-CO2P00403 227 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 OPN1MWP04001 364 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 OPN1MW2P0DN77 364 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 OPN1MW3P0DN78 364 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 PLGLAQ15195 96 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 ELOBQ15370 118 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 MMD2Q8IY49 270 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 GATAD1Q8WUU5 269 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 ZNF430Q9H8G1 570 aaPredicted RBP10.58□□□□□ -0.72
LIMS1-204ENST00000409441 SIGLEC9Q9Y336 463 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 ARL2-SNX15V9GYD0 113 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 TGOLN2O43493 480 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 LINC00869P0C866 280 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 ARL14EPLP0DKL9 152 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 PPP1R27Q86WC6 154 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 PRIMA1Q86XR5 153 aa10.58□□□□□ -0.72
LIMS1-204ENST00000409441 OR10W1Q8NGF6 305 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms