RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GGTLC1Q9BX51 225 aa21.25■□□□□ 0.99
HMGB1-205ENST00000399494 U3KQ87 197 aa21.25■□□□□ 0.99
HMGB1-205ENST00000399494 H2AFB2P0C5Z0 115 aa21.24■□□□□ 0.99
HMGB1-205ENST00000399494 ELLP55199 621 aaPredicted RBP21.24■□□□□ 0.99
HMGB1-205ENST00000399494 RNASEH2CQ8TDP1 164 aaKnown RBP21.24■□□□□ 0.99
HMGB1-205ENST00000399494 FNDC4Q9H6D8 234 aaPredicted RBP21.24■□□□□ 0.99
HMGB1-205ENST00000399494 LOC102724200A0A096LPH7 203 aaPredicted RBP21.23■□□□□ 0.99
HMGB1-205ENST00000399494 SCGB2A1O75556 95 aa21.23■□□□□ 0.99
HMGB1-205ENST00000399494 SCAF4O95104 1147 aaKnown RBP21.23■□□□□ 0.99
HMGB1-205ENST00000399494 MARC2Q969Z3 335 aa21.23■□□□□ 0.99
HMGB1-205ENST00000399494 YIF1AO95070 293 aa21.22■□□□□ 0.99
HMGB1-205ENST00000399494 IAPPP10997 89 aa21.22■□□□□ 0.99
HMGB1-205ENST00000399494 MLANAQ16655 118 aa21.22■□□□□ 0.99
HMGB1-205ENST00000399494 ETFRF1Q6IPR1 90 aa21.22■□□□□ 0.99
HMGB1-205ENST00000399494 MITD1Q8WV92 249 aa21.22■□□□□ 0.99
HMGB1-205ENST00000399494 LINC00476Q8WZB0 136 aa21.22■□□□□ 0.99
HMGB1-205ENST00000399494 DAZ1Q9NQZ3 744 aaKnown RBP21.22■□□□□ 0.99
HMGB1-205ENST00000399494 IGHV3OR16-8A0A075B7F1 116 aa21.21■□□□□ 0.99
HMGB1-205ENST00000399494 C8orf88P0DMB2 117 aa21.21■□□□□ 0.99
HMGB1-205ENST00000399494 MAGT1Q9H0U3 335 aa21.21■□□□□ 0.99
HMGB1-205ENST00000399494 MRPL27Q9P0M9 148 aaKnown RBP21.21■□□□□ 0.99
HMGB1-205ENST00000399494 SYNGR2O43760 224 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 TMEM50AO95807 157 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 IFNA4P05014 189 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 SLC25A4P12235 298 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 ATP5IP56385 69 aaPredicted RBP21.2■□□□□ 0.98
HMGB1-205ENST00000399494 BTNL8Q6UX41 500 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 OR4X1Q8NH49 305 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 TMEM170AQ8WVE7 144 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 CIB3Q96Q77 187 aaPredicted RBP21.2■□□□□ 0.98
HMGB1-205ENST00000399494 SEC22CQ9BRL7 303 aa21.2■□□□□ 0.98
HMGB1-205ENST00000399494 TRAV25A0A0B4J276 109 aa21.19■□□□□ 0.98
HMGB1-205ENST00000399494 MPTX1A8MV57 137 aa21.19■□□□□ 0.98
HMGB1-205ENST00000399494 CLN5O75503 358 aa21.19■□□□□ 0.98
HMGB1-205ENST00000399494 DEFA1P59665 94 aa21.19■□□□□ 0.98
HMGB1-205ENST00000399494 DEFA3P59666 94 aa21.19■□□□□ 0.98
HMGB1-205ENST00000399494 IFITM3Q01628 133 aa21.19■□□□□ 0.98
HMGB1-205ENST00000399494 MRPL36Q9P0J6 103 aaKnown RBP21.19■□□□□ 0.98
HMGB1-205ENST00000399494 PAIP2BQ9ULR5 123 aaKnown RBP21.19■□□□□ 0.98
HMGB1-205ENST00000399494 WRBO00258 174 aa21.18■□□□□ 0.98
HMGB1-205ENST00000399494 ZNF207O43670 478 aaKnown RBP21.18■□□□□ 0.98
HMGB1-205ENST00000399494 ZNF431Q8TF32 576 aaPredicted RBP21.18■□□□□ 0.98
HMGB1-205ENST00000399494 C15orf62A8K5M9 175 aa21.17■□□□□ 0.98
HMGB1-205ENST00000399494 K7EMT4 169 aa21.17■□□□□ 0.98
HMGB1-205ENST00000399494 RND2P52198 227 aa21.17■□□□□ 0.98
HMGB1-205ENST00000399494 RAB11AP62491 216 aa21.17■□□□□ 0.98
HMGB1-205ENST00000399494 RPP30P78346 268 aaKnown RBP21.17■□□□□ 0.98
HMGB1-205ENST00000399494 ZNF600Q6ZNG1 722 aa21.17■□□□□ 0.98
HMGB1-205ENST00000399494 WFDC3Q8IUB2 231 aa21.17■□□□□ 0.98
HMGB1-205ENST00000399494 TRAV30A0A087WSZ9 112 aa21.16■□□□□ 0.98
HMGB1-205ENST00000399494 NKX2-1P43699 371 aaPredicted RBP21.16■□□□□ 0.98
HMGB1-205ENST00000399494 EWSR1Q01844 656 aaKnown RBP eCLIP21.16■□□□□ 0.98
HMGB1-205ENST00000399494 IAH1Q2TAA2 248 aaPredicted RBP21.16■□□□□ 0.98
HMGB1-205ENST00000399494 PRSS54Q6PEW0 395 aa21.16■□□□□ 0.98
HMGB1-205ENST00000399494 RBPMS2Q6ZRY4 209 aaKnown RBP21.16■□□□□ 0.98
HMGB1-205ENST00000399494 GINS3Q9BRX5 216 aa21.16■□□□□ 0.98
HMGB1-205ENST00000399494 LY6G6CO95867 125 aa21.15■□□□□ 0.98
HMGB1-205ENST00000399494 SCGB1D2O95969 90 aa21.15■□□□□ 0.98
HMGB1-205ENST00000399494 ACY3Q96HD9 319 aa21.15■□□□□ 0.98
HMGB1-205ENST00000399494 A0A0J9YWU9 116 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 CXorf65A6NEN9 183 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 PMS2P11Q13670 270 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 C12orf45Q8N5I9 185 aaPredicted RBP21.14■□□□□ 0.97
HMGB1-205ENST00000399494 OR4D5Q8NGN0 318 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 OR10C1Q96KK4 312 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 GSKIPQ9P0R6 139 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 TP53TG1Q9Y2A0 90 aa21.14■□□□□ 0.97
HMGB1-205ENST00000399494 PUS1Q9Y606 427 aaKnown RBP eCLIP21.14■□□□□ 0.97
HMGB1-205ENST00000399494 FAM25EA8MYX2 175 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 CCSO14618 274 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 ID3Q02535 119 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 TIGITQ495A1 244 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 TOMM20LQ6UXN7 152 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 Q6ZWC4 215 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 NRARPQ7Z6K4 114 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 TMEM116Q8NCL8 245 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 OR1S2Q8NGQ3 325 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 ZNF414Q96IQ9 312 aa21.13■□□□□ 0.97
HMGB1-205ENST00000399494 TRAV14DV4A0A0A6YYC5 116 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 SPRY2O43597 315 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 SSSCA1O60232 199 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 OR10J1P30954 320 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 POLR2GP62487 172 aaKnown RBP eCLIP21.12■□□□□ 0.97
HMGB1-205ENST00000399494 SPANXN5Q5MJ07 72 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 ZBTB8BQ8NAP8 495 aaPredicted RBP21.12■□□□□ 0.97
HMGB1-205ENST00000399494 NPIPB3Q92617 1050 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 SLC35E1Q96K37 410 aa21.12■□□□□ 0.97
HMGB1-205ENST00000399494 GPN1Q9HCN4 374 aaPredicted RBP21.12■□□□□ 0.97
HMGB1-205ENST00000399494 IGHV7-4-1A0A0J9YVY3 117 aa21.11■□□□□ 0.97
HMGB1-205ENST00000399494 STRAPQ9Y3F4 350 aaKnown RBP21.11■□□□□ 0.97
HMGB1-205ENST00000399494 C5orf51A6NDU8 294 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 NUPR2A6NF83 97 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 H3BP45 60 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 IL5P05113 134 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 IGLC1P0CG04 106 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 BMI1P35226 326 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 GPX4P36969 197 aaPredicted RBP21.1■□□□□ 0.97
HMGB1-205ENST00000399494 LAMTOR1Q6IAA8 161 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 CEMP1Q6PRD7 247 aaPredicted RBP21.1■□□□□ 0.97
HMGB1-205ENST00000399494 SPAG8Q99932 426 aaPredicted RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms