RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SSC4DQ8WTU2 575 aa7.71□□□□□ -1.18
COL28A1-201ENST00000399429 SLC25A33Q9BSK2 321 aa7.71□□□□□ -1.18
COL28A1-201ENST00000399429 LINC00271P0C7V0 271 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 KIR2DL2P43627 348 aaPredicted RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 RPS20P60866 119 aaKnown RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 Q6ZS49 121 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 LCNL1Q6ZST4 164 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 CENPVQ7Z7K6 275 aaPredicted RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 TEX45Q8NA69 505 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 MRPL32Q9BYC8 188 aaKnown RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 KLK15Q9H2R5 256 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 SLC25A10Q9UBX3 287 aaPredicted RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 CYSLTR1Q9Y271 337 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 PCNX3Q9H6A9 2034 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 TRAV26-1A0A087WT03 109 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 CD46P15529 392 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 MPV17P39210 176 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 CTRLP40313 264 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 KIR3DL3Q8N743 410 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 TMEM189A5PLL7 270 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 AGFG2O95081 481 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 VMA21Q3ZAQ7 101 aa7.7□□□□□ -1.18
COL28A1-201ENST00000399429 SRSF8Q9BRL6 282 aaKnown RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 RIF1Q5UIP0 2472 aaKnown RBP7.7□□□□□ -1.18
COL28A1-201ENST00000399429 A0A1W2PPM0 123 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 COX8AP10176 69 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 FOXF2Q12947 444 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 PEAR1Q5VY43 1037 aaPredicted RBP7.69□□□□□ -1.18
COL28A1-201ENST00000399429 RASL11AQ6T310 242 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 ATP5L2Q7Z4Y8 100 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 MOB3BQ86TA1 216 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 FOXC2Q99958 501 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 SAA2-SAA4A0A096LPE2 208 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 G3V4G9 280 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 SNCGO76070 127 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 RFPL3SP0C7P2 107 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 MYOD1P15172 320 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 ZNF146Q15072 292 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 DTX1Q86Y01 620 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 IFI27L1Q96BM0 104 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 VWCEQ96DN2 955 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 PSPNO60542 156 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 GFRA3O60609 400 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 MAGEA5P43359 124 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 HOXA4Q00056 320 aaPredicted RBP7.69□□□□□ -1.18
COL28A1-201ENST00000399429 MLANAQ16655 118 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 SPEM1Q8N4L4 309 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 IFI27L2Q9H2X8 130 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 EPDR1Q9UM22 224 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 H0YJW9 148 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 DLL1O00548 723 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 SMAD7O15105 426 aaKnown RBP7.69□□□□□ -1.18
COL28A1-201ENST00000399429 ACP1P24666 158 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 AMTNQ6UX39 209 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 NEUROG1Q92886 237 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 LOXL2Q9Y4K0 774 aa7.69□□□□□ -1.18
COL28A1-201ENST00000399429 SOX21Q9Y651 276 aaPredicted RBP7.69□□□□□ -1.18
COL28A1-201ENST00000399429 CACNA1HO95180 2353 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 IGHV1OR15-9A0A0B4J2B8 117 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 TMEM238LA0A1B0GVL6 79 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 A6NJY4 79 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 PTGDSP41222 190 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 FOXG1P55316 489 aaPredicted RBP7.68□□□□□ -1.18
COL28A1-201ENST00000399429 C2orf83Q53S99 150 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 ZNRF1Q8ND25 227 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 NFAM1Q8NET5 270 aaPredicted RBP7.68□□□□□ -1.18
COL28A1-201ENST00000399429 MAP1LC3AQ9H492 121 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 GGTLC3B5MD39 225 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 H3BMG7 143 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 KLRC4-KLRK1H3BQV0 150 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 DUTP33316 252 aaKnown RBP7.68□□□□□ -1.18
COL28A1-201ENST00000399429 GTSCR1Q86UQ5 136 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 MOGAT3Q86VF5 341 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 WDR31Q8NA23 367 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 K7ERJ3 54 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 HBDP02042 147 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 RPL13AP40429 203 aaKnown RBP7.68□□□□□ -1.18
COL28A1-201ENST00000399429 CRYBA4P53673 196 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 RNPS1Q15287 305 aaKnown RBP7.68□□□□□ -1.18
COL28A1-201ENST00000399429 SH2D6Q7Z4S9 175 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 ORMDL3Q8N138 153 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 ARPC1AQ92747 370 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 MRAP2Q96G30 205 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 SS18L2Q9UHA2 77 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 HIGD1AQ9Y241 93 aa7.68□□□□□ -1.18
COL28A1-201ENST00000399429 J3QW42 95 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 NXPH1P58417 271 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 ERVK11-1P61568 191 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 SMIM27A0A1W2PRY6 76 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 OR11H12B2RN74 326 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 MGST3O14880 152 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 CCL4P13236 92 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 HES1Q14469 280 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 C16orf54Q6UWD8 224 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 FADS6Q8N9I5 356 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 OR11H1Q8NG94 326 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 OR11H2Q8NH07 326 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 RASL11BQ9BPW5 248 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 CADP27708 2225 aa7.67□□□□□ -1.18
COL28A1-201ENST00000399429 TRAV8-1A0A0A6YYK1 113 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms