RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 ZNF98A6NK75 572 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 LCNL1Q6ZST4 164 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 LINC01356Q8N9X3 169 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 LILRA1O75019 489 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 UCP1P25874 307 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 DEFB104AQ8WTQ1 72 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 WDR81Q562E7 1941 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 SPTBP11277 2137 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 EP300Q09472 2414 aaPredicted RBP11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 PAX8Q06710 450 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 NHLRC3Q5JS37 347 aa11.79□□□□□ -0.52
PCDHA11-201ENST00000398640 DPRXA6NFQ7 191 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 APOMO95445 188 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 SDHCQ99643 169 aaPredicted RBP11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 RNASE7Q9H1E1 156 aaKnown RBP11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 A0A1B0GTI1 187 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 PYYP10082 97 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 FAM19A2Q8N3H0 131 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 RNF125Q96EQ8 232 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 FOXG1P55316 489 aaPredicted RBP11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 LRTM2Q8N967 370 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 MLNRO43193 412 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 ZNF329Q86UD4 541 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 NEUROG1Q92886 237 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 LTBP2Q14767 1821 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 YPEL1O60688 119 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 YPEL2Q96QA6 119 aa11.78□□□□□ -0.52
PCDHA11-201ENST00000398640 HIGD1CA8MV81 97 aa11.77□□□□□ -0.52
PCDHA11-201ENST00000398640 ZNF497Q6ZNH5 498 aa11.77□□□□□ -0.52
PCDHA11-201ENST00000398640 ZNF324BQ6AW86 544 aaPredicted RBP11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 TMEM183AQ8IXX5 376 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 SSBP4Q9BWG4 385 aaPredicted RBP11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 EVI2AP22794 236 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 CIARTQ8N365 385 aaPredicted RBP11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 CACNG8Q8WXS5 425 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 OTORQ9NRC9 128 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 IGHV2-26A0A0B4J1V2 119 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 TRAV12-3A0A0B4J271 114 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 DUSP14O95147 198 aaKnown RBP11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 C15orf61A6NNL5 157 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 OR9G9P0C7N8 305 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 SELLP14151 372 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 GAS1P54826 345 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 OR10W1Q8NGF6 305 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 BPESC1Q9GZL8 116 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 ST20Q9HBF5 79 aa11.77□□□□□ -0.53
PCDHA11-201ENST00000398640 IGHV3-73A0A0B4J1V6 119 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 NDUFS8O00217 210 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 ATP5LO75964 103 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 TRBV6-7A0A0A0MS04 114 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 PRR32B1ATL7 298 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 ZNF474Q6S9Z5 364 aaPredicted RBP11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 CHCHD5Q9BSY4 110 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 RBMY1BA6NDE4 496 aaKnown RBP11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 RBMY1EA6NEQ0 496 aaKnown RBP11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 RBMY1DP0C7P1 496 aaKnown RBP11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 RBMY1A1P0DJD3 496 aaKnown RBP11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 RBMY1CP0DJD4 496 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 DTX2Q86UW9 622 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 NUDT10Q8NFP7 164 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 PMCHL2Q9BQD1 86 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 EFNA2O43921 213 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 VENTXO95231 258 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 IGHV3-53P01767 116 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 B3GALT5-AS1P59052 145 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 CTAG1AP78358 180 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 TCF23Q7RTU1 214 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 ORMDL3Q8N138 153 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 VCX2Q9H322 139 aa11.76□□□□□ -0.53
PCDHA11-201ENST00000398640 FABP5P3A8MUU1 101 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 FAM110DQ8TAY7 271 aaPredicted RBP11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 A0A0U1RRA0 63 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 DDTP30046 118 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 IGHV3-64A0A075B6Q5 118 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 SFTA2Q6UW10 78 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 SIGLEC15Q6ZMC9 328 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 COL4A4P53420 1690 aaPredicted RBP11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 TYMSP04818 313 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 TMEM200BQ69YZ2 307 aa11.75□□□□□ -0.53
PCDHA11-201ENST00000398640 EFNB1P98172 346 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 PI4KAP42356 2102 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 TTC9CQ8N5M4 171 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 C18orf12Q96KH6 178 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 ARHGEF17Q96PE2 2063 aaPredicted RBP11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 IFI27P40305 119 aaPredicted RBP11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 PVRIGQ6DKI7 326 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 ZNF600Q6ZNG1 722 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 SLC50A1Q9BRV3 221 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 IGKV1-9A0A0C4DH69 117 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 SRSF3P84103 164 aaKnown RBP11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 TMEM95Q3KNT9 176 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 RUSC1-AS1Q66K80 236 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 PTPRDP23468 1912 aa11.74□□□□□ -0.53
PCDHA11-201ENST00000398640 IGFBP3P17936 291 aaPredicted RBP11.73□□□□□ -0.53
PCDHA11-201ENST00000398640 COL8A2P25067 703 aa11.73□□□□□ -0.53
PCDHA11-201ENST00000398640 ACTL10Q5JWF8 245 aa11.73□□□□□ -0.53
PCDHA11-201ENST00000398640 TMEM144Q7Z5S9 345 aa11.73□□□□□ -0.53
PCDHA11-201ENST00000398640 PAQR4Q8N4S7 273 aaPredicted RBP11.73□□□□□ -0.53
PCDHA11-201ENST00000398640 ZNF319Q9P2F9 582 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 189.4 ms