RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CX3CL1P78423 397 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 MUC21Q5SSG8 566 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 OR4F17Q8NGA8 305 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 C19orf24Q9BVV8 132 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 GSX1Q9H4S2 264 aaPredicted RBP13.19□□□□□ -0.3
PCDH1-203ENST00000394536 LAMTOR2Q9Y2Q5 125 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 A0A1W2PRE2 83 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 FAM90A9PA6NNJ1 464 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 GGTLC3B5MD39 225 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 C9JCJ5 164 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.19□□□□□ -0.3
PCDH1-203ENST00000394536 IZUMO1RA6ND01 250 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 SRRM4A7MD48 611 aaKnown RBP13.19□□□□□ -0.3
PCDH1-203ENST00000394536 CSN1S1P47710 185 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 FAM162BQ5T6X4 162 aa13.19□□□□□ -0.3
PCDH1-203ENST00000394536 ZNF474Q6S9Z5 364 aaPredicted RBP13.18□□□□□ -0.3
PCDH1-203ENST00000394536 NUDT10Q8NFP7 164 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 NUDT11Q96G61 164 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 EXPH5Q8NEV8 1989 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 OR5AL1P0C617 328 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 DLX1P56177 255 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 YPEL3P61236 119 aaPredicted RBP13.18□□□□□ -0.3
PCDH1-203ENST00000394536 TMEM191AQ9H0A3 160 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 HILPDAQ9Y5L2 63 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 TRAV9-1A0A075B6T8 112 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 IGHV3-35A0A0C4DH35 117 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 CD24P25063 80 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 LOXL3P58215 753 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 NHLH1Q02575 133 aa13.18□□□□□ -0.3
PCDH1-203ENST00000394536 SRSF12Q8WXF0 261 aaKnown RBP13.18□□□□□ -0.3
PCDH1-203ENST00000394536 MRPL32Q9BYC8 188 aaKnown RBP13.18□□□□□ -0.3
PCDH1-203ENST00000394536 F2RL2O00254 374 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 C19orf35Q6ZS72 473 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 OR8A1Q8NGG7 326 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 MCRIP2Q9BUT9 160 aaKnown RBP13.17□□□□□ -0.3
PCDH1-203ENST00000394536 HIGD1AQ9Y241 93 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 PRRX1P54821 245 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 OR8B3Q8NGG8 313 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 RCHY1Q96PM5 261 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 TMEM14BQ9NUH8 114 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 V9GYV3 84 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 VWC2Q2TAL6 325 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 CACNG8Q8WXS5 425 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 TANC2Q9HCD6 1990 aa13.17□□□□□ -0.3
PCDH1-203ENST00000394536 DLEU1O43261 78 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 C17orf58Q2M2W7 97 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 ZNF738Q8NE65 137 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 DIRC2Q96SL1 478 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 MAP1LC3CQ9BXW4 147 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 A0A1W2PS18 150 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 LYNX1G3V0Z9 82 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 NPSP0C0P6 89 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 LYNX1P0DP58 116 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 PPOXP50336 477 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 FAM168AQ92567 244 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 ASCL2Q99929 193 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 FBXL15Q9H469 300 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 FAM90A27PA6NNH2 459 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 RNASE2P10153 161 aaKnown RBP13.16□□□□□ -0.3
PCDH1-203ENST00000394536 LOXL4Q96JB6 756 aa13.16□□□□□ -0.3
PCDH1-203ENST00000394536 NCKAP5O14513 1909 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.15□□□□□ -0.3
PCDH1-203ENST00000394536 TRAV8-1A0A0A6YYK1 113 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 FAM87AP0C7U9 286 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 LINC00312Q9Y6C7 94 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 WNT2P09544 360 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 GRAMD2BQ96HH9 432 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 AAMDCQ9H7C9 122 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 SELENOKQ9Y6D0 94 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 IGHG3P01860 377 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 HBBP68871 147 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 BSPH1Q075Z2 132 aa13.15□□□□□ -0.3
PCDH1-203ENST00000394536 OR4C46A6NHA9 309 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 BMPR1BO00238 502 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 GNG7O60262 68 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 P0C879 139 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 MC5RP33032 325 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 ZNF138P52744 262 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 UNQ5815/PRO19632Q6UWF5 114 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 NUP35Q8NFH5 326 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 TMEM70Q9BUB7 260 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 SPRY4Q9C004 299 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 IGHV3OR16-8A0A075B7F1 116 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 SH2D7A6NKC9 451 aaPredicted RBP13.14□□□□□ -0.31
PCDH1-203ENST00000394536 CA7P43166 264 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 PDLIM4P50479 330 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 RBPJQ06330 500 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 MSMPQ1L6U9 139 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 C2orf83Q53S99 150 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 TMEM186Q96B77 213 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 GPR82Q96P67 336 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 GAFA1Q96PS6 74 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 LPAR2Q9HBW0 351 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 EPDR1Q9UM22 224 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 ATRXP46100 2492 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 C17orf100A8MU93 164 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 CORTO00230 105 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 TM4SF5O14894 197 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 SLAQ13239 276 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 CLEC7AQ9BXN2 247 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms