RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RPRMLQ8N4K4 120 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 AGMATQ9BSE5 352 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 NPIPB5A8MRT5 1133 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 UPK2O00526 184 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 ZNF138P52744 262 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 WDR83OSQ9Y284 106 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 IGKV1D-33P01593 117 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 IGKV1-33P01594 117 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 SUPT4H1P63272 117 aaKnown RBP9.88□□□□□ -0.83
SYNPO-202ENST00000394243 APC2O95996 2303 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 PRR32B1ATL7 298 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 GFRA3O60609 400 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 OR9G9P0C7N8 305 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 SPATA31B1PQ5VZV4 182 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 TRAV8-3A0A0A6YYJ7 113 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 CCL1P22362 96 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 DEFB123Q8N688 67 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 FGF11Q92914 225 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 ATP6V0BQ99437 205 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 LRRK1Q38SD2 2015 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 F2Z2F3 143 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 TMEM42Q69YG0 159 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 FAM89BQ8N5H3 189 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 RPP25LQ8N5L8 163 aaKnown RBP9.87□□□□□ -0.83
SYNPO-202ENST00000394243 MRPL27Q9P0M9 148 aaKnown RBP9.87□□□□□ -0.83
SYNPO-202ENST00000394243 TM4SF5O14894 197 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 MLNRO43193 412 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 SLC25A48Q6ZT89 311 aaKnown RBP9.87□□□□□ -0.83
SYNPO-202ENST00000394243 PPP1R27Q86WC6 154 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 CHAC1Q9BUX1 264 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 IGHV3OR16-10A0A075B7F0 116 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 IGKV1-9A0A0C4DH69 117 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 LINC01559Q495D7 138 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 LINC00114Q6XXX2 140 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 C20orf144Q9BQM9 153 aa9.87□□□□□ -0.83
SYNPO-202ENST00000394243 SAA2-SAA4A0A096LPE2 208 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 SAA2P0DJI9 122 aaPredicted RBP9.86□□□□□ -0.83
SYNPO-202ENST00000394243 DEFB104AQ8WTQ1 72 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 MALP21145 153 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 FBLN5Q9UBX5 448 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 ITGB1BP1O14713 200 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 TREML4Q6UXN2 200 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 LINC01587Q99440 93 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 GGTLC1Q9BX51 225 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 C1QTNF5Q9BXJ0 243 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 SPANXA1Q9NS26 97 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 ZNF236Q9UL36 1845 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 A0A1B0GUS0 222 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 SMAD7O15105 426 aaKnown RBP9.86□□□□□ -0.83
SYNPO-202ENST00000394243 ARPC1AQ92747 370 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 QSER1Q2KHR3 1735 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 CLEC2AQ6UVW9 174 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 PATE3B3GLJ2 98 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 TOMM40O96008 361 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 LINC00158P58513 81 aa9.86□□□□□ -0.83
SYNPO-202ENST00000394243 REPIN1Q9BWE0 567 aaKnown RBP9.86□□□□□ -0.83
SYNPO-202ENST00000394243 CDCP2Q5VXM1 449 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 GAGE2AQ6NT46 116 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 ITLN2Q8WWU7 325 aaPredicted RBP9.85□□□□□ -0.83
SYNPO-202ENST00000394243 RNF125Q96EQ8 232 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 ITGBL1O95965 494 aaPredicted RBP9.85□□□□□ -0.83
SYNPO-202ENST00000394243 FAM216BQ8N7L0 139 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 ZNF625Q96I27 306 aaPredicted RBP9.85□□□□□ -0.83
SYNPO-202ENST00000394243 LYZL4Q96KX0 146 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 STPG4Q8N801 248 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 KIAA2026Q5HYC2 2103 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 IGLV3-21P80748 117 aaPredicted RBP9.85□□□□□ -0.83
SYNPO-202ENST00000394243 ZNF837Q96EG3 531 aaPredicted RBP9.85□□□□□ -0.83
SYNPO-202ENST00000394243 ZNF497Q6ZNH5 498 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 WBP1LQ9NX94 342 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 FANCMQ8IYD8 2048 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 AHCTF1Q8WYP5 2266 aa9.85□□□□□ -0.83
SYNPO-202ENST00000394243 CRPP02741 224 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 MORN3Q6PF18 240 aaPredicted RBP9.84□□□□□ -0.83
SYNPO-202ENST00000394243 GAS1P54826 345 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 GAGE1Q13065 139 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 ZC2HC1BQ5TFG8 222 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 K7EP13 123 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 LYZL1Q6UWQ5 148 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 COX6A1P12074 109 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 CENPVQ7Z7K6 275 aaPredicted RBP9.84□□□□□ -0.83
SYNPO-202ENST00000394243 STRCQ7RTU9 1775 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 CEP290O15078 2479 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 LHFPL1Q86WI0 220 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 FER1L5A0AVI2 2057 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 C9orf118A6NHY6 69 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 C9JQL5 133 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 MORN2Q502X0 79 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 MRAPQ8TCY5 172 aa9.84□□□□□ -0.83
SYNPO-202ENST00000394243 J3QW42 95 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 YPEL1O60688 119 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 TCRAP04437 139 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 LINC00271P0C7V0 271 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 EXOC3-AS1Q8N2X6 119 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 TMEM86BQ8N661 226 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 YPEL2Q96QA6 119 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 DPM3Q9P2X0 92 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 PVRIGQ6DKI7 326 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 C8orf46Q8TAG6 207 aa9.83□□□□□ -0.84
SYNPO-202ENST00000394243 DUSP15Q9H1R2 295 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms