RNA–Protein interactions for RNA: ENST00000379018.7

PDLIM4-202, Transcript of PDZ and LIM domain 4, humanhuman

TSL 1 (best) BASIC

Gene PDLIM4, Length 1,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-202ENST00000379018 LPCAT3Q6P1A2 487 aa12.73□□□□□ -0.37
PDLIM4-202ENST00000379018 Q6ZRM9 215 aa12.73□□□□□ -0.37
PDLIM4-202ENST00000379018 LYSMD2Q8IV50 215 aa12.73□□□□□ -0.37
PDLIM4-202ENST00000379018 SAMD12Q8N8I0 201 aa12.73□□□□□ -0.37
PDLIM4-202ENST00000379018 C1QTNF4Q9BXJ3 329 aa12.73□□□□□ -0.37
PDLIM4-202ENST00000379018 CORTO00230 105 aa12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 IGKV3-20P01619 116 aa12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 PGAM2P15259 253 aa12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 NAT1P18440 290 aa12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 NUTF2P61970 127 aaKnown RBP12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 ZNF846Q147U1 533 aa12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 SOHLH1Q5JUK2 328 aa12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 FAM212BQ9NTI7 297 aaPredicted RBP12.72□□□□□ -0.37
PDLIM4-202ENST00000379018 IGKV1-5P01602 117 aa12.71□□□□□ -0.37
PDLIM4-202ENST00000379018 SPART-AS1P0CW21 52 aa12.71□□□□□ -0.37
PDLIM4-202ENST00000379018 PI3P19957 117 aa12.71□□□□□ -0.37
PDLIM4-202ENST00000379018 SNRPD3P62318 126 aaKnown RBP12.71□□□□□ -0.37
PDLIM4-202ENST00000379018 OR4X1Q8NH49 305 aa12.71□□□□□ -0.37
PDLIM4-202ENST00000379018 A0A0B4J293 547 aa12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 IGKV1-17P01599 117 aa12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 HNRNPCP07910 306 aaKnown RBP eCLIP12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 VBP1P61758 197 aa12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 C1orf134Q5TEV5 83 aa12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 Q6ZR54 194 aa12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 RNASE11Q8TAA1 199 aaKnown RBP12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 PPP1R14BQ96C90 147 aa12.7□□□□□ -0.38
PDLIM4-202ENST00000379018 FAM90A26D6RGX4 464 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 H3BMM0 161 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 M0QYG6 137 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 CD74P04233 296 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 DEFB1P60022 68 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 NCS1P62166 190 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 C16orf54Q6UWD8 224 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 SNX29P2Q8IUI4 249 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 GLMPQ8WWB7 406 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 NACAE9PAV3 2078 aa12.69□□□□□ -0.38
PDLIM4-202ENST00000379018 C16orf90A8MZG2 172 aa12.68□□□□□ -0.38
PDLIM4-202ENST00000379018 RND2P52198 227 aa12.68□□□□□ -0.38
PDLIM4-202ENST00000379018 TRIM16LQ309B1 348 aa12.68□□□□□ -0.38
PDLIM4-202ENST00000379018 RNASE12Q5GAN4 147 aaKnown RBP12.68□□□□□ -0.38
PDLIM4-202ENST00000379018 TP53RKQ96S44 253 aa12.68□□□□□ -0.38
PDLIM4-202ENST00000379018 HSPG2P98160 4391 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 AP2S1P53680 142 aaPredicted RBP12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 PIGPP57054 158 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 LSM3P62310 102 aaKnown RBP12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 DHODHQ02127 395 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 FAM222AQ5U5X8 452 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 SIGLEC15Q6ZMC9 328 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 Q6ZNX1 250 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 GPX8Q8TED1 209 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 Q8WTZ3 238 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 NRN1Q9NPD7 142 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 U3KQE9 123 aa12.67□□□□□ -0.38
PDLIM4-202ENST00000379018 TRAV30A0A087WSZ9 112 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 RPS10-NUDT3A0A1W2PQS6 291 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 INS-IGF2F8WCM5 200 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 IL4P05112 153 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 HLA-DRB4P13762 266 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 OR10J1P30954 320 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 RCVRNP35243 200 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 UCP3P55916 312 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 USF2Q15853 346 aaPredicted RBP12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 SP6Q3SY56 376 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 GDF5OSQ5U4N7 250 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 ZNF705AQ6ZN79 300 aaPredicted RBP12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 MAPKAPK5-AS1Q8N8E1 139 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 OR1S2Q8NGQ3 325 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 LINC00052Q96N35 136 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 NIPSNAP3BQ9BS92 247 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 HLA-DRB4X5D2U9 266 aa12.66□□□□□ -0.38
PDLIM4-202ENST00000379018 A0A0G2JRQ6 117 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 TMEM189A5PLL7 270 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 ATG12O94817 140 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 P0C879 139 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 IGLC1P0CG04 106 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 RPS19P39019 145 aaKnown RBP12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 GSG1LQ6UXU4 331 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 MCFD2Q8NI22 146 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 RRNAD1Q96FB5 475 aaKnown RBP12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 DKK2Q9UBU2 259 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 RFNGQ9Y644 331 aa12.65□□□□□ -0.38
PDLIM4-202ENST00000379018 ZNF705FA8MVS1 300 aaPredicted RBP12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 ZNF705DP0CH99 300 aaPredicted RBP12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 ZNF705BP0CI00 300 aaPredicted RBP12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 PRSS54Q6PEW0 395 aa12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 TMEM88Q6PEY1 159 aa12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 OR4B1Q8NGF8 309 aa12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 NEU1Q99519 415 aa12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 C7orf50Q9BRJ6 194 aaKnown RBP12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 TMED3Q9Y3Q3 217 aa12.64□□□□□ -0.39
PDLIM4-202ENST00000379018 C3orf85A0A1B0GTC6 90 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 TMEM127O75204 238 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 NXPH3O95157 252 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 RND3P61587 244 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 TNP2Q05952 138 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 ACY3Q96HD9 319 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 FAM210BQ96KR6 192 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 HEYLQ9NQ87 328 aaPredicted RBP12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 COPZ2Q9P299 210 aa12.63□□□□□ -0.39
PDLIM4-202ENST00000379018 COMMD3Q9UBI1 195 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms