RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SGMS2Q8NHU3 365 aa10.58□□□□□ -0.72
SQSTM1-201ENST00000360718 TRAV3A0A0B4J244 114 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 IGKV1-16P04430 117 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 GCHFRP30047 84 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 RPL15P61313 204 aaKnown RBP10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 POU2AF1Q16633 256 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 MOB3BQ86TA1 216 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 MRPL41Q8IXM3 137 aaKnown RBP10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 HARBI1Q96MB7 349 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 DERL1Q9BUN8 251 aa10.57□□□□□ -0.72
SQSTM1-201ENST00000360718 IGHV1-3A0A0C4DH29 117 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF705GA8MUZ8 300 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 IQCJQ1A5X6 159 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 TMEM177Q53S58 311 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 OR4A47Q6IF82 309 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 TMEM14BQ9NUH8 114 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 LY96Q9Y6Y9 160 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 TNCP24821 2201 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.56□□□□□ -0.723e-12■■■□□ 17
SQSTM1-201ENST00000360718 A0A096LNT2 108 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 ODF3BA8MYP8 253 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 HOXB4P17483 251 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 ATP5IP56385 69 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 TPTE2P1Q5T6R2 138 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 SSMEM1Q8WWF3 244 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 AURKAIP1Q9NWT8 199 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 PRNDQ9UKY0 176 aa10.56□□□□□ -0.72
SQSTM1-201ENST00000360718 LY6LH3BQJ8 138 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 SSX2Q16385 188 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 GBGT1Q8N5D6 347 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 STPG3Q8N7X2 389 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 ARL2-SNX15V9GYD0 113 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 SCO2A0A1W2PP80 73 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 A8MWP6 167 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 UBE2E1P51965 193 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 YPEL3P61236 119 aaPredicted RBP10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 ARSJQ5FYB0 599 aaPredicted RBP10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 MINOS1Q5TGZ0 78 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 CCDC144NLQ6NUI1 221 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 KRTAP1-3Q8IUG1 177 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 OCC1Q8TAD7 63 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 VSTM2AQ8TAG5 236 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF257Q9Y2Q1 563 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 OR51B2Q9Y5P1 312 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 MINOS1-NBL1R4GNA1 71 aa10.55□□□□□ -0.72
SQSTM1-201ENST00000360718 CCDC168Q8NDH2 2452 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 A0A1W2PRD5 423 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 A0A1W2PRF3 423 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 A0A1W2PRM7 423 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 B4DSR2 109 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 C9JCJ5 164 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 CA2P00918 260 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 MSMBP08118 114 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 AREGP15514 252 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 LGALS7P47929 136 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 RPL19P84098 196 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 TEX38Q6PEX7 206 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF664Q8N3J9 261 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF114Q8NC26 417 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 C11orf52Q96A22 123 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 MBD6Q96DN6 1003 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 TBX15Q96SF7 602 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 FKBP11Q9NYL4 201 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 BET1LQ9NYM9 111 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 HILPDAQ9Y5L2 63 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 CR1P17927 2039 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 IGHV3-72A0A0B4J1Y9 119 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 OOSP1A8MZH6 123 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 SAA1P0DJI8 122 aaPredicted RBP10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF90Q03938 601 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 PAX8Q06710 450 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF124Q15973 351 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 VMA21Q3ZAQ7 101 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 MAPK1IP1LQ8NDC0 245 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 NDUFAF3Q9BU61 184 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 PLEKHA3Q9HB20 300 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 TMEM167BQ9NRX6 74 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 IL36BQ9NZH7 164 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 SLC45A2Q9UMX9 530 aa10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 TBL2Q9Y4P3 447 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 YTHDF2Q9Y5A9 579 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 PRRC2AP48634 2157 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-201ENST00000360718 TRBV20OR9-2A0A075B6H5 130 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 PGPEP1LA6NFU8 196 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 SRRM4A7MD48 611 aaKnown RBP10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 PRR20EP86478 221 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 PRR20CP86479 221 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 PRR20DP86480 221 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 PRR20BP86481 221 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 PRR20AP86496 221 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 Q5PR19 223 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 LHFPL4Q7Z7J7 247 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 C1orf159Q96HA4 380 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 C19orf24Q9BVV8 132 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 HINT2Q9BX68 163 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 SEPSECSQ9HD40 501 aaKnown RBP10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 ZNF469Q96JG9 3925 aaPredicted RBP10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 A0A1W2PPI3 338 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 UPK2O00526 184 aa10.53□□□□□ -0.72
SQSTM1-201ENST00000360718 OR4A5Q8NH83 315 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms