RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ZNF788Q6ZQV5 615 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.83□□□□□ -0.84
CLIP3-201ENST00000360535 RITA1Q96K30 269 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 ASCL2Q99929 193 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 COMPP49747 757 aaPredicted RBP9.83□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF137PP52743 207 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 UBE2G1P62253 170 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 LYPD2Q6UXB3 125 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 Q6ZVH6 145 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 TCF24Q7RTU0 167 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 LINC00305Q7Z4B0 112 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 KCNS1Q96KK3 526 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 AKAP6Q13023 2319 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 ZZEF1O43149 2961 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 DLL1O00548 723 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 Q0VG73 95 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 C2orf83Q53S99 150 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 RUSC1-AS1Q66K80 236 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 ASCL3Q9NQ33 180 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 PGPA6NDG6 321 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 NKX6-3A6NJ46 265 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF324O75467 553 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 TNXAQ16473 311 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 NUDT10Q8NFP7 164 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 OR5B3Q8NH48 314 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 TSKUQ8WUA8 353 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 NUDT11Q96G61 164 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF714Q96N38 554 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF430Q9H8G1 570 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 SSUH2Q9Y2M2 353 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 RELNP78509 3460 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 MBD3L4A6NDZ8 208 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 MBD3L3A6NE82 208 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 DPRXA6NFQ7 191 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 MBD3L5A6NJ08 208 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 SH2D7A6NKC9 451 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 MBD3L2Q8NHZ7 208 aaPredicted RBP9.82□□□□□ -0.84
CLIP3-201ENST00000360535 LOXL4Q96JB6 756 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 FAM167A-AS1Q96KT0 104 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF835Q9Y2P0 537 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF257Q9Y2Q1 563 aa9.82□□□□□ -0.84
CLIP3-201ENST00000360535 HIGD1CA8MV81 97 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 H0YJW9 148 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 TMEM200BQ69YZ2 307 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 PATE2Q6UY27 113 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 ST6GALNAC6Q969X2 333 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 SPOCK3Q9BQ16 436 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 C20orf144Q9BQM9 153 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 LPAR2Q9HBW0 351 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 IGLV3-9A0A075B6K5 115 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 TRAV9-1A0A075B6T8 112 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 A0A1W2PRE2 83 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 M0R2Z0 102 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 PEX7O00628 323 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 HLA-DQA1P01909 254 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 MT-ND6P03923 174 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 HINT1P49773 126 aaPredicted RBP9.81□□□□□ -0.84
CLIP3-201ENST00000360535 NUP35Q8NFH5 326 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 RNF2Q99496 336 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 GAL3ST2Q9H3Q3 398 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 LY96Q9Y6Y9 160 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 IZUMO1RA6ND01 250 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 SIAH2O43255 324 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 HNRNPA3P51991 378 aaKnown RBP9.81□□□□□ -0.84
CLIP3-201ENST00000360535 C1orf185Q5T7R7 199 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 NDUFA4L2Q9NRX3 87 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 CLEC5AQ9NY25 188 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 TP73-AS1Q9UF72 201 aa9.81□□□□□ -0.84
CLIP3-201ENST00000360535 TRBV9A0A0B4J1U6 114 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 GDF5OSQ5U4N7 250 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 C11orf42Q8N5U0 333 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 IGF2BP2-AS1Q96M15 143 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 BET1LQ9NYM9 111 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 CEP295Q9C0D2 2601 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 CNTFRP26992 372 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 TBR1Q16650 682 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 ETFRF1Q6IPR1 90 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 ERASQ7Z444 233 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 PDPNQ86YL7 162 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 C1orf174Q8IYL3 243 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 KIR3DL3Q8N743 410 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 C18orf32Q8TCD1 76 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 MCRIP2Q9BUT9 160 aaKnown RBP9.8□□□□□ -0.84
CLIP3-201ENST00000360535 CLEC7AQ9BXN2 247 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 NIT1Q86X76 327 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 OR4B1Q8NGF8 309 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 PGLYRP4Q96LB8 373 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 PPP1R14DQ9NXH3 145 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 LINC00312Q9Y6C7 94 aa9.8□□□□□ -0.84
CLIP3-201ENST00000360535 TLN1Q9Y490 2541 aaKnown RBP9.8□□□□□ -0.84
CLIP3-201ENST00000360535 SMIM27A0A1W2PRY6 76 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 M0QZK8 103 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 FAM87AP0C7U9 286 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 POU2AF1Q16633 256 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF329Q86UD4 541 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 SPACA3Q8IXA5 215 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 OR4C13Q8NGP0 309 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 OSR1Q8TAX0 266 aaPredicted RBP9.79□□□□□ -0.84
CLIP3-201ENST00000360535 FAM222BQ8WU58 562 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 IGFBPL1Q8WX77 278 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms