RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 AMMECR1Q9Y4X0 333 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FOCADQ5VW36 1801 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 LOXHD1Q8IVV2 1947 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 RGPD3A6NKT7 1758 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 RGPD4Q7Z3J3 1758 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PEX7O00628 323 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PCBD1P61457 104 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 ANXA2RQ3ZCQ2 193 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PLPP4Q5VZY2 271 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PCSK4Q6UW60 755 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 ORMDL3Q8N138 153 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 SRSF8Q9BRL6 282 aaKnown RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM202A6NGA9 273 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 NXPH3O95157 252 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 COX6A1P12074 109 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FOXA3P55318 350 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF56Q15929 161 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PRIMA1Q86XR5 153 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM52Q8NDY8 209 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 MCRIP2Q9BUT9 160 aaKnown RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FOXQ1Q9C009 403 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PLAUP00749 431 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 P0DMU3 169 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 FAM231AP0DMU4 169 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 FAM231CP0DMU5 169 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 KLRB1Q12918 225 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 BAALCQ8WXS3 180 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TRGV9Q99603 122 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 DSCR4P56555 118 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 IGLV3-21P80748 117 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 FGFRL1Q8N441 504 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM116Q8NCL8 245 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF355PQ9NSJ1 428 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 OCIAD1Q9NX40 245 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TRBV6-1A0A0K0K1D8 114 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TRBV10-2A0A0K0K1G8 114 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 MS4A18H0YCH9 400 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 K7ERJ3 54 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 CRYGSP22914 178 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 ATP5EP56381 51 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 CCL8P80075 99 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 FOXE3Q13461 319 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 DEFB134Q4QY38 66 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 MIC13Q5XKP0 118 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 SCGB1D4Q6XE38 83 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 SIGLEC15Q6ZMC9 328 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 STPG3Q8N7X2 389 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 SPACA5Q96QH8 159 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 THSD7BQ9C0I4 1608 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 MBD3L4A6NDZ8 208 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 MBD3L3A6NE82 208 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 MBD3L5A6NJ08 208 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 M0R135 149 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 SLURP2P0DP57 97 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 INSL3P51460 131 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 Q1RN00 199 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 KLHDC9Q8NEP7 349 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 CFHR4Q92496 578 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 SLC25A39Q9BZJ4 359 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV12-1A0A0B4J245 112 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TRGV8A0A0C4DH27 118 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 IGKV1-9A0A0C4DH69 117 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 LOXL3P58215 753 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 UBE2D3P61077 147 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 UBE2D2P62837 147 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 S100A7L2Q5SY68 101 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 Q8IYB0 196 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 JPT2Q9H910 190 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 TP73-AS1Q9UF72 201 aa3.37□□□□□ -1.87
NEDD4-201ENST00000338963 LGALS9O00182 355 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 NGFP01138 241 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 IGKV1-5P01602 117 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 PSMB8P28062 276 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 GTSCR1Q86UQ5 136 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 Q9Y3F1 56 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 TRPT1Q86TN4 253 aaKnown RBP3.36□□□□□ -1.87
NEDD4-201ENST00000338963 CARD19Q96LW7 228 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF488Q96MN9 340 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 INAFM2P0DMQ5 153 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 FAM201AQ5SY85 155 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 HRCT1Q6UXD1 115 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 NTN5Q8WTR8 489 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-201ENST00000338963 DPH3Q96FX2 82 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 FAM236AA0A1B0GUQ0 79 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 FAM236BA0A1B0GV22 79 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 KNCNA6PVL3 124 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF799Q96GE5 643 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 AJUBAQ96IF1 538 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 ZMAT4Q9H898 229 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM74BQ9NUR3 256 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 PMS2P5A8MQ11 134 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 MGST3O14880 152 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 CD7P09564 240 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 VMA21Q3ZAQ7 101 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 CLLU1OSQ5K130 101 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 PRR31Q5SQ13 230 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF493Q6ZR52 646 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 Q8N1Y9 231 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 URB1-AS1Q96HZ7 61 aa3.36□□□□□ -1.87
NEDD4-201ENST00000338963 FAM173AQ9BQD7 235 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms