RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 TMEM186Q96B77 213 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 FAM167A-AS1Q96KT0 104 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 SLC25A2Q9BXI2 301 aa12.97□□□□□ -0.33
USHBP1-202ENST00000324554 A0A1W2PN81 502 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 IGLV2-23P01705 113 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 RAB4AP20338 218 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 LOXP28300 417 aaPredicted RBP12.96□□□□□ -0.33
USHBP1-202ENST00000324554 COMPP49747 757 aaPredicted RBP12.96□□□□□ -0.33
USHBP1-202ENST00000324554 C8orf31Q8N9H6 132 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 NHLRC2Q8NBF2 726 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 VSTM2AQ8TAG5 236 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 LINC00479Q96M42 142 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 SAMD10Q9BYL1 202 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 PRORYQ9H606 182 aa12.96□□□□□ -0.33
USHBP1-202ENST00000324554 NAV3Q8IVL0 2385 aa12.96□□□□□ -0.34
USHBP1-202ENST00000324554 A0A1W2PRE2 83 aa12.96□□□□□ -0.34
USHBP1-202ENST00000324554 M0R143 59 aa12.96□□□□□ -0.34
USHBP1-202ENST00000324554 ISLRO14498 428 aa12.96□□□□□ -0.34
USHBP1-202ENST00000324554 MGST1P10620 155 aaKnown RBP12.96□□□□□ -0.34
USHBP1-202ENST00000324554 PPOXP50336 477 aa12.96□□□□□ -0.34
USHBP1-202ENST00000324554 VN1R17PQ8TDU5 208 aa12.96□□□□□ -0.34
USHBP1-202ENST00000324554 MRPL32Q9BYC8 188 aaKnown RBP12.96□□□□□ -0.34
USHBP1-202ENST00000324554 FNDC4Q9H6D8 234 aaPredicted RBP12.96□□□□□ -0.34
USHBP1-202ENST00000324554 DCHS2Q6V1P9 2916 aa12.95□□□□□ -0.34
USHBP1-202ENST00000324554 PLAUP00749 431 aa12.95□□□□□ -0.34
USHBP1-202ENST00000324554 CA1P00915 261 aaPredicted RBP12.95□□□□□ -0.34
USHBP1-202ENST00000324554 DLX6P56179 175 aa12.95□□□□□ -0.34
USHBP1-202ENST00000324554 ADORA2A-AS1P86434 159 aa12.95□□□□□ -0.34
USHBP1-202ENST00000324554 IBA57Q5T440 356 aaKnown RBP12.95□□□□□ -0.34
USHBP1-202ENST00000324554 RCHY1Q96PM5 261 aa12.95□□□□□ -0.34
USHBP1-202ENST00000324554 ZNF430Q9H8G1 570 aaPredicted RBP12.95□□□□□ -0.34
USHBP1-202ENST00000324554 WASHC3Q9Y3C0 194 aa12.95□□□□□ -0.34
USHBP1-202ENST00000324554 ABCA4P78363 2273 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 MRPL54Q6P161 138 aaKnown RBP12.94□□□□□ -0.34
USHBP1-202ENST00000324554 SSX8Q7RTT4 187 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 FAM103A1Q9BTL3 118 aaKnown RBP12.94□□□□□ -0.34
USHBP1-202ENST00000324554 FBXL7Q9UJT9 491 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 IGHV3-48P01763 117 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 ZNF137PP52743 207 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 UBE2L3P68036 154 aaKnown RBP12.94□□□□□ -0.34
USHBP1-202ENST00000324554 ZNF705AQ6ZN79 300 aaPredicted RBP12.94□□□□□ -0.34
USHBP1-202ENST00000324554 FAM168AQ92567 244 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 PAM16Q9Y3D7 125 aa12.94□□□□□ -0.34
USHBP1-202ENST00000324554 SPTBN1Q01082 2364 aaKnown RBP12.94□□□□□ -0.34
USHBP1-202ENST00000324554 SMIM27A0A1W2PRY6 76 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 SHISA9B4DS77 424 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 GPX1P07203 203 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 PYYP10082 97 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 TMEM155Q4W5P6 130 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 C20orf144Q9BQM9 153 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 DNAJC4Q9NNZ3 241 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 DYNLRB1Q9NP97 96 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 SERTAD4Q9NUC0 356 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 KAAG1Q9UBP8 84 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 ACACBO00763 2458 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 VSTM5A8MXK1 200 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 E7EQL1 145 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 MT-ND6P03923 174 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 WDR73Q6P4I2 378 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 RITA1Q96K30 269 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 TPSG1Q9NRR2 321 aa12.93□□□□□ -0.34
USHBP1-202ENST00000324554 BMPR1BO00238 502 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 SLC25A17O43808 307 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 SIGLECL1Q8N7X8 197 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 RNF2Q99496 336 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 IGKV1D-37A0A075B6S9 117 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 PLXNB1O43157 2135 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 IGHV1-8P0DP01 117 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 BRS3P32247 399 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 MRGPRG-AS1Q2M3A8 158 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 PATE2Q6UY27 113 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 Q8N976 141 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 NPIPB3Q92617 1050 aa12.92□□□□□ -0.34
USHBP1-202ENST00000324554 SSBP3Q9BWW4 388 aaPredicted RBP12.92□□□□□ -0.34
USHBP1-202ENST00000324554 MRPL36Q9P0J6 103 aaKnown RBP12.92□□□□□ -0.34
USHBP1-202ENST00000324554 TBL2Q9Y4P3 447 aaKnown RBP12.92□□□□□ -0.34
USHBP1-202ENST00000324554 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.91□□□□□ -0.34
USHBP1-202ENST00000324554 A0A1W2PPI3 338 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 AMY1AP04745 511 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 SRIP30626 198 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 SUB1P53999 127 aaKnown RBP eCLIP12.91□□□□□ -0.34
USHBP1-202ENST00000324554 C11orf42Q8N5U0 333 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 MIEN1Q9BRT3 115 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 ZNF355PQ9NSJ1 428 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 CDC42EP3Q9UKI2 254 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 HIVEP3Q5T1R4 2406 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 A0A1W2PS18 150 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 TCRBV4S1A1TA0A5B7 111 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 COX7A2P2O60397 106 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 KRTDAPP60985 99 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 TMEM183BQ1AE95 376 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 VMA21Q3ZAQ7 101 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 OR10J3Q5JRS4 329 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 VAMP8Q9BV40 100 aa12.91□□□□□ -0.34
USHBP1-202ENST00000324554 ANKHD1Q8IWZ3 2542 aaKnown RBP12.9□□□□□ -0.34
USHBP1-202ENST00000324554 TRAV34A0A0B4J273 112 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 ZNF253O75346 499 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 REG1AP05451 166 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 MC5RP33032 325 aa12.9□□□□□ -0.34
USHBP1-202ENST00000324554 C10orf113Q5VZT2 155 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms