RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SLC25A16P16260 332 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 RPL31P62899 125 aaKnown RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 IL15RAQ13261 267 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 MRPL14Q6P1L8 145 aaKnown RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 Q6ZVH6 145 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 GATD1Q8NB37 220 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 LINC01587Q99440 93 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 IGKV1D-42A0A075B6H8 117 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 GFRA3O60609 400 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 IL6RP08887 468 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-201ENST00000303395 ZFAND6Q6FIF0 208 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF576Q9H609 170 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 K7EP13 123 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 IFI27P40305 119 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-201ENST00000303395 COL9A2Q14055 689 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-201ENST00000303395 ABHD17AQ96GS6 310 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 LHX9Q9NQ69 397 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 TRBV20OR9-2A0A075B6H5 130 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 RRHO14718 337 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 LYPD3O95274 346 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 OR2H2O95918 312 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 PTGER1P34995 402 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 DRD3P35462 400 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 UNC119Q13432 240 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 DEFB121Q5J5C9 76 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 SVIPQ8NHG7 77 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 SSMEM1Q8WWF3 244 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 ZNHIT1O43257 154 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 SRIP30626 198 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 LTBRP36941 435 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 COL10A1Q03692 680 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM177Q53S58 311 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 C1QL3Q5VWW1 255 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 C1orf210Q8IVY1 113 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 FGFRL1Q8N441 504 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 REPIN1Q9BWE0 567 aaKnown RBP4.43□□□□□ -1.7
SCN1A-201ENST00000303395 WNT10AQ9GZT5 417 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 SIGLEC8Q9NYZ4 499 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 HIGD1BQ9P298 99 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 TCF19Q9Y242 345 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 TRBV6-1A0A0K0K1D8 114 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM238C9JI98 176 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 C4orf48Q5BLP8 95 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 C14orf144Q96I85 54 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 PRADC1Q9BSG0 188 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 SNHG12Q9BXW3 62 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 CCL28Q9NRJ3 127 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 TRGV4A0A0C4DH28 118 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 NDUFB4O95168 129 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 MYOD1P15172 320 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 GOLT1AQ6ZVE7 132 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 PHF7Q9BWX1 381 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-201ENST00000303395 FOXA2Q9Y261 457 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-201ENST00000303395 NPPCP23582 126 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 BAALCQ8WXS3 180 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 RASL10BQ96S79 203 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 COL4A6Q14031 1691 aa4.43□□□□□ -1.7
SCN1A-201ENST00000303395 AHRRA9YTQ3 701 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 SPRY1O43609 319 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 CMC4P56277 68 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 KRTCAP3Q53RY4 240 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 MAFAQ8NHW3 353 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 WNT2BQ93097 391 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 SPACA5Q96QH8 159 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 PLXNA4Q9HCM2 1894 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 SYNGR3O43761 229 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 CXCL13O43927 109 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 PI3P19957 117 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 LINC01551Q86U37 167 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 RFESDQ8TAC1 157 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 GLMPQ8WWB7 406 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 MRGPRFQ96AM1 343 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 QRFPP83859 136 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 LCNL1Q6ZST4 164 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV2OR16-5A0A0B4J2B6 119 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 M0R2P5 195 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 SMAD7O15105 426 aaKnown RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 C5orf47Q569G3 176 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 TDHQ8IZJ6 230 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 NRTNQ99748 197 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 LENEPQ9Y5L5 61 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 A0A0G2JMM0 328 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 A0A1W2PPB8 328 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 KIR3DP1A8MWS1 328 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 CLPSP04118 112 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 KLF5Q13887 457 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 GUSBP11Q6P575 273 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 PCSK4Q6UW60 755 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 SPATA12Q7Z6I5 190 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 SMIM20Q8N5G0 67 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 CHAC1Q9BUX1 264 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 DUSP15Q9H1R2 295 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-201ENST00000303395 PTPN13Q12923 2485 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 hADV29S1A0JD25 119 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 C15orf61A6NNL5 157 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 ADARB2-AS1A8MUL3 147 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 IGKV3-20P01619 116 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 TCRAP04437 139 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 MPV17P39210 176 aa4.42□□□□□ -1.7
SCN1A-201ENST00000303395 PPP1R27Q86WC6 154 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms