RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GTSCR1Q86UQ5 136 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 C1RLQ9NZP8 487 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 APOBEC3AP31941 199 aaPredicted RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 MAGEA5P43359 124 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 ZNF83P51522 516 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 ERVK11-1P61568 191 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 DMRTC2Q8IXT2 367 aaPredicted RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 SPEM1Q8N4L4 309 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 ZADH2Q8N4Q0 377 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 TRAV12-2A0A075B6T6 113 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 TRAV24A0A0B4J272 114 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 A0A1W2PRE2 83 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.37□□□□□ -1.55
VPS35-201ENST00000299138 IGKCP01834 107 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 COL4A2P08572 1712 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CEACAM3P40198 252 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 PMVKQ15126 192 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 HCP5Q6MZN7 132 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 ZNF645Q8N7E2 425 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 SMRP1Q8NCR6 262 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 SCNM1Q9BWG6 230 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CHTOPQ9Y3Y2 248 aaKnown RBP5.37□□□□□ -1.55
VPS35-201ENST00000299138 HS3ST3B1Q9Y662 390 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CD3EP07766 207 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 PTGDSP41222 190 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CCL20P78556 96 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CXorf66Q5JRM2 361 aaPredicted RBP5.37□□□□□ -1.55
VPS35-201ENST00000299138 TMEM144Q7Z5S9 345 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 KIR3DS1Q14943 382 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CD300EQ496F6 205 aaPredicted RBP5.37□□□□□ -1.55
VPS35-201ENST00000299138 TRGV8A0A0C4DH27 118 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 H3BMM0 161 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 WDR82Q6UXN9 313 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 ZNF818PQ6ZRF7 136 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 PATE1Q8WXA2 126 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 UBE2WQ96B02 151 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 TRPM6Q9BX84 2022 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 GNG5P63218 68 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 Q6ZS52 159 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 ZNF664Q8N3J9 261 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 NPIPB3Q92617 1050 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 JPT2Q9H910 190 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CRIM1Q9NZV1 1036 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 JPT1Q9UK76 154 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 C9orf172C9J069 976 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 FCN3O75636 299 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 MOSP00540 346 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 ZNF688P0C7X2 276 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 TNFRSF1AP19438 455 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 LHX2P50458 406 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 PIGYQ3MUY2 71 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CHCHD1Q96BP2 118 aaKnown RBP5.37□□□□□ -1.55
VPS35-201ENST00000299138 CHAC1Q9BUX1 264 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 CKAP5Q14008 2032 aa5.37□□□□□ -1.55
VPS35-201ENST00000299138 URB1O60287 2271 aaKnown RBP5.36□□□□□ -1.55
VPS35-201ENST00000299138 ANAPC1Q9H1A4 1944 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 hDV102S1A0JD36 115 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 CT83Q5H943 113 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 KLF17Q5JT82 389 aaPredicted RBP5.36□□□□□ -1.55
VPS35-201ENST00000299138 Q6AWC8 147 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 FAM159AQ6UWV7 190 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 TMEM92Q6UXU6 159 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 FAM231DQ6ZW35 169 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 LINC01551Q86U37 167 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 GCSAMQ8N6F7 178 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 DEFB104AQ8WTQ1 72 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 TMEM171Q8WVE6 324 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 CACNG8Q8WXS5 425 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 NPCDR1Q9BY65 106 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 TET1Q8NFU7 2136 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 H7C1H1 209 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 PRRG2O14669 202 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 CEACAM4O75871 244 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 NPSP0C0P6 89 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 HAMPP81172 84 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 SLAQ13239 276 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 MPV17L2Q567V2 206 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 WIPF2Q8TF74 440 aaPredicted RBP5.36□□□□□ -1.55
VPS35-201ENST00000299138 FSCN3Q9NQT6 498 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 SYNGR1O43759 233 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 FBXW9Q5XUX1 488 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 NRTNQ99748 197 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 KLF13Q9Y2Y9 288 aaPredicted RBP5.36□□□□□ -1.55
VPS35-201ENST00000299138 IGHV3OR15-7A0A075B7D8 119 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 IGHV3-48P01763 117 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 PATE4P0C8F1 98 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 TEX38Q6PEX7 206 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 IGHV1-69-2A0A0G2JMI3 117 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 TBR1Q16650 682 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 FER1L6-AS1Q8NA97 138 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 WFDC9Q8NEX5 89 aa5.36□□□□□ -1.55
VPS35-201ENST00000299138 IGFBP2P18065 325 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 PSG9Q00887 426 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 PSG4Q00888 419 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 SLC22A18ASQ8N1D0 253 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 C3orf56Q8N813 242 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 LYZL4Q96KX0 146 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 SIT1Q9Y3P8 196 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 SCN3AQ9NY46 2000 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 DENND4AQ7Z401 1863 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms