RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OR2J3O76001 311 aa13□□□□□ -0.33
USP4-201ENST00000265560 SRP19P09132 144 aaKnown RBP13□□□□□ -0.33
USP4-201ENST00000265560 OR10J4P0C629 311 aa13□□□□□ -0.33
USP4-201ENST00000265560 Q6ZS46 218 aa13□□□□□ -0.33
USP4-201ENST00000265560 OR5G3P0C626 314 aa13□□□□□ -0.33
USP4-201ENST00000265560 IGHV4-31P0DP07 118 aa13□□□□□ -0.33
USP4-201ENST00000265560 CST9LP1Q5W188 147 aa13□□□□□ -0.33
USP4-201ENST00000265560 IL17RELQ6ZVW7 336 aa13□□□□□ -0.33
USP4-201ENST00000265560 MRPL41Q8IXM3 137 aaKnown RBP13□□□□□ -0.33
USP4-201ENST00000265560 MS4A10Q96PG2 267 aa13□□□□□ -0.33
USP4-201ENST00000265560 TRAV20A0A0B4J274 112 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 AMY1AP04745 511 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 ATP5IP56385 69 aaPredicted RBP12.99□□□□□ -0.33
USP4-201ENST00000265560 SOHLH1Q5JUK2 328 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 SLC35E3Q7Z769 313 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 RBM14Q96PK6 669 aaKnown RBP12.99□□□□□ -0.33
USP4-201ENST00000265560 NKX6-2Q9C056 277 aaPredicted RBP12.99□□□□□ -0.33
USP4-201ENST00000265560 BEX4Q9NWD9 120 aaPredicted RBP12.99□□□□□ -0.33
USP4-201ENST00000265560 C1RLQ9NZP8 487 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 IGHV3OR16-8A0A075B7F1 116 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 I3L2K1 104 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 ZNF506Q5JVG8 444 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 LEMD1Q68G75 181 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 UNQ5815/PRO19632Q6UWF5 114 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 CBLN2Q8IUK8 224 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 OR51G1Q8NGK1 321 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 OR4X1Q8NH49 305 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 FANCD2OSQ96PS1 177 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 K7EIM0 57 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 M0R036 132 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 BLCAPP62952 87 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 ZNF674Q2M3X9 581 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 ZNF114Q8NC26 417 aa12.99□□□□□ -0.33
USP4-201ENST00000265560 PRB4P10163 310 aaPredicted RBP12.98□□□□□ -0.33
USP4-201ENST00000265560 TIGITQ495A1 244 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 SPNS3Q6ZMD2 512 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 SVBPQ8N300 66 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 OR1B1Q8NGR6 318 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 OR4F5Q8NH21 305 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 OR4F4Q96R69 305 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 ATP5G3P48201 142 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 CD81P60033 236 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 DEFB112Q30KQ8 113 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 PATE2Q6UY27 113 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 DUX5Q96PT3 197 aa12.98□□□□□ -0.33
USP4-201ENST00000265560 TCRBV4S1A1TA0A5B7 111 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 SEC14L6B5MCN3 397 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 CRYGCP07315 174 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 C10orf91Q5T1B1 145 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 C5orf56Q8N8D9 126 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 CARHSP1Q9Y2V2 147 aaKnown RBP12.97□□□□□ -0.33
USP4-201ENST00000265560 FNDC10F2Z333 226 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 OR7C2O60412 319 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 NDUFB8O95169 186 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 RHOBP62745 196 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 RPUSD4Q96CM3 377 aaKnown RBP12.97□□□□□ -0.33
USP4-201ENST00000265560 NOL4LQ96MY1 436 aaPredicted RBP12.97□□□□□ -0.33
USP4-201ENST00000265560 IGHV4-59P01825 116 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 STAG3L2P0CL84 134 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 STAG3L3P0CL85 134 aa12.97□□□□□ -0.33
USP4-201ENST00000265560 LOXL1Q08397 574 aaPredicted RBP12.97□□□□□ -0.33
USP4-201ENST00000265560 KHDC3LQ587J8 217 aa12.96□□□□□ -0.33
USP4-201ENST00000265560 H3BTX0 84 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 COX7A2P2O60397 106 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 HLA-DRB1P01911 266 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 PYYP10082 97 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 PSMB3P49720 205 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 TMEM116Q8NCL8 245 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 VAX2Q9UIW0 290 aa12.96□□□□□ -0.34
USP4-201ENST00000265560 PSG1P11464 419 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 MEF2BQ02080 365 aaPredicted RBP12.95□□□□□ -0.34
USP4-201ENST00000265560 ETFRF1Q6IPR1 90 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 DNAJC4Q9NNZ3 241 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 AURKAIP1Q9NWT8 199 aaPredicted RBP12.95□□□□□ -0.34
USP4-201ENST00000265560 LYZP61626 148 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 CLRN3Q8NCR9 226 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 ZNF503Q96F45 646 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 MEGF9Q9H1U4 602 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 KCNIP2Q9NS61 270 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 FUT9Q9Y231 359 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 OR2T8A6NH00 312 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 IGLC1P0CG04 106 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 AWAT1Q58HT5 328 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 PVRIGQ6DKI7 326 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 RBMS3Q6XE24 437 aaKnown RBP12.95□□□□□ -0.34
USP4-201ENST00000265560 LCNL1Q6ZST4 164 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 THAP8Q8NA92 274 aa12.95□□□□□ -0.34
USP4-201ENST00000265560 YTHDF2Q9Y5A9 579 aaKnown RBP12.95□□□□□ -0.34
USP4-201ENST00000265560 C11orf94C9JXX5 98 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 IGKV1-17P01599 117 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 GCHFRP30047 84 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 TMEM95Q3KNT9 176 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 LINC00305Q7Z4B0 112 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 DERL1Q9BUN8 251 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 RPS10P5Q9NQ39 176 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 IGLV11-55A0A075B6I3 123 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 PSMB11A5LHX3 300 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 H3BQ15 152 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 TSPAN4O14817 238 aa12.94□□□□□ -0.34
USP4-201ENST00000265560 C10orf113Q5VZT2 155 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms