RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 PEF1Q9UBV8 284 aaKnown RBP3.59□□□□□ -1.83
VPS13C-202ENST00000261517 CLDN16Q9Y5I7 305 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 EML6Q6ZMW3 1958 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 USF3Q68DE3 2245 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 TRBV24-1A0A075B6N3 115 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 C5orf52A6NGY3 159 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 H0YL77 283 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 RHODO00212 210 aa3.59□□□□□ -1.83
VPS13C-202ENST00000261517 SAA2-SAA4A0A096LPE2 208 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 C7orf71A4D174 169 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 H3BQ85 93 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 SAA2P0DJI9 122 aaPredicted RBP3.59□□□□□ -1.84
VPS13C-202ENST00000261517 PRTN3P24158 256 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 ARF6P62330 175 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 PIP4P1Q86T03 277 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 C11orf42Q8N5U0 333 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 NUDT11Q96G61 164 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 RAXQ9Y2V3 346 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 SRSF1Q07955 248 aaKnown RBP eCLIP3.59□□□□□ -1.84
VPS13C-202ENST00000261517 FER1L6-AS1Q8NA97 138 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 TRAV24A0A0B4J272 114 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 OR11H12B2RN74 326 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 PRSS2P07478 247 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 ZNF672Q499Z4 452 aaPredicted RBP3.59□□□□□ -1.84
VPS13C-202ENST00000261517 OR11H1Q8NG94 326 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 OR11H2Q8NH07 326 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 PLPPR1Q8TBJ4 325 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 NPIPB3Q92617 1050 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 NEU1Q99519 415 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 SPRR3Q9UBC9 169 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 SONP18583 2426 aaKnown RBP3.59□□□□□ -1.84
VPS13C-202ENST00000261517 IGHV3-64DA0A0J9YX35 117 aa3.59□□□□□ -1.84
VPS13C-202ENST00000261517 MBNL3Q9NUK0 354 aaKnown RBP3.59□□□□□ -1.84
VPS13C-202ENST00000261517 IGKV1D-33P01593 117 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 IGKV1-33P01594 117 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TMEM136Q6ZRR5 245 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 RBMY1BA6NDE4 496 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 RBMY1EA6NEQ0 496 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 DNAL4O96015 105 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 CLPSP04118 112 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 RBMY1DP0C7P1 496 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 RBMY1A1P0DJD3 496 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 RBMY1CP0DJD4 496 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 SAA1P0DJI8 122 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TCL1AP56279 114 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TEX36Q5VZQ5 186 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 MRPL53Q96EL3 112 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 ST20Q9HBF5 79 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 LENEPQ9Y5L5 61 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 ADAMTS9Q9P2N4 1935 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 A0A1B0GWJ7 208 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TOMM40O96008 361 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 IGHV1-46P01743 117 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 B3GALT5-AS1P59052 145 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 YPEL3P61236 119 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TEX38Q6PEX7 206 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 RFLNBQ8N5W9 214 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 Q8NFD4 153 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 MESP1Q9BRJ9 268 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 C7orf69Q9H7B7 122 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 SPANXCQ9NY87 97 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 EPG5Q9HCE0 2579 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 IGHV1-8P0DP01 117 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 LINC01545Q5VT33 79 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 PNRC2Q9NPJ4 139 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 FASNP49327 2511 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TLN2Q9Y4G6 2542 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 SRP19P09132 144 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 SRIP30626 198 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TMEM14EPQ6UXP3 125 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 OR5AN1Q8NGI8 311 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 OR13A1Q8NGR1 328 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 MRPL27Q9P0M9 148 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TRAV14DV4A0A0A6YYC5 116 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 IGHV2-26A0A0B4J1V2 119 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TPTE2P1Q5T6R2 138 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 Q9H3A6 140 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 A0A1W2PP11 408 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 PAX8Q06710 450 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 PRSS8Q16651 343 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TSKUQ8WUA8 353 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 EPDR1Q9UM22 224 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 USP9YO00507 2555 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 ZNF826PQ6ZT77 177 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 CHTOPQ9Y3Y2 248 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 MORN3Q6PF18 240 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 OR8A1Q8NGG7 326 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 OR10S1Q8NGN2 331 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 MRPL20Q9BYC9 149 aaKnown RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 TMEM14CQ9P0S9 112 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 DKK4Q9UBT3 224 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 PLNP26678 52 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 CEACAM8P31997 349 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-202ENST00000261517 WNT5AP41221 380 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 C5orf64Q2M2E5 130 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 GOLT1AQ6ZVE7 132 aa3.58□□□□□ -1.84
VPS13C-202ENST00000261517 CSPG4Q6UVK1 2322 aa3.57□□□□□ -1.84
VPS13C-202ENST00000261517 UBE2E1P51965 193 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms