RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PATE2Q6UY27 113 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 TMEM136Q6ZRR5 245 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 KIR2DL5BA0A0G2JN68 375 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 KIR2DL5BA0A0G2JPC4 375 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 IGHV1-8P0DP01 117 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 TCL1AP56279 114 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 SLC35B1P78383 322 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 OR10J3Q5JRS4 329 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 KIR2DL5AQ8N109 375 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 HSPB9Q9BQS6 159 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 PLXNB1O43157 2135 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 A0A1W2PPI3 338 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 IGHV3-48P01763 117 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 HLA-DQA1P01909 254 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 AMY1AP04745 511 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 GNB4Q9HAV0 340 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 F2Z2F3 143 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 ENSAO43768 121 aaKnown RBP13.22□□□□□ -0.29
HOXD3-201ENST00000249440 BRS3P32247 399 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 TOMM20LQ6UXN7 152 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 LINC00305Q7Z4B0 112 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 ZNF329Q86UD4 541 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 LINC00479Q96M42 142 aa13.22□□□□□ -0.29
HOXD3-201ENST00000249440 IZUMO1RA6ND01 250 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 PEX7O00628 323 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 CD33P20138 364 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 SIGLECL1Q8N7X8 197 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 NHLRC2Q8NBF2 726 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 STXBP6Q8NFX7 210 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 TMEM133Q9H2Q1 129 aa13.21□□□□□ -0.29
HOXD3-201ENST00000249440 REG1AP05451 166 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 TPTE2P1Q5T6R2 138 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 MRPL54Q6P161 138 aaKnown RBP13.21□□□□□ -0.3
HOXD3-201ENST00000249440 FAM231DQ6ZW35 169 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 Q8NA96 180 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 FXYD5Q96DB9 178 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 RITA1Q96K30 269 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 TPSG1Q9NRR2 321 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 MRPL36Q9P0J6 103 aaKnown RBP13.21□□□□□ -0.3
HOXD3-201ENST00000249440 ZNF835Q9Y2P0 537 aa13.21□□□□□ -0.3
HOXD3-201ENST00000249440 FSTL3O95633 263 aa13.2□□□□□ -0.3
HOXD3-201ENST00000249440 TEX45Q8NA69 505 aa13.2□□□□□ -0.3
HOXD3-201ENST00000249440 TNFRSF14Q92956 283 aa13.2□□□□□ -0.3
HOXD3-201ENST00000249440 ZNF331Q9NQX6 463 aaPredicted RBP13.2□□□□□ -0.3
HOXD3-201ENST00000249440 TNFRSF19Q9NS68 423 aa13.2□□□□□ -0.3
HOXD3-201ENST00000249440 ADGRG4Q8IZF6 3080 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 IGHV1-69-2A0A0G2JMI3 117 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 SHISA9B4DS77 424 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 E7EQL1 145 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 GPX1P07203 203 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 MRGPRG-AS1Q2M3A8 158 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 TEX43Q6ZNM6 134 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 C11orf42Q8N5U0 333 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 C22orf15Q8WYQ4 148 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 PERPQ96FX8 193 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 ACACBO00763 2458 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 IGLC7A0M8Q6 106 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 ZNF253O75346 499 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 CRYGCP07315 174 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 RNF224P0DH78 156 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 KIAA1644Q3SXP7 199 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 RASL11AQ6T310 242 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 CBLN4Q9NTU7 201 aa13.19□□□□□ -0.3
HOXD3-201ENST00000249440 POLEQ07864 2286 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 PKD1L2Q7Z442 2459 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 IGHV3-72A0A0B4J1Y9 119 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 CA1P00915 261 aaPredicted RBP13.18□□□□□ -0.3
HOXD3-201ENST00000249440 ORM2P19652 201 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 HCP5Q6MZN7 132 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 FAM168AQ92567 244 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 CHRDL1Q9BU40 450 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 SRIP30626 198 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 PVRIGQ6DKI7 326 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 OR1B1Q8NGR6 318 aa13.18□□□□□ -0.3
HOXD3-201ENST00000249440 TRAV34A0A0B4J273 112 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 C22orf46C9J442 243 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 M0R143 59 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 BMPR1BO00238 502 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 EREGO14944 169 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 PLAUP00749 431 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 APCSP02743 223 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 APOBEC3AP31941 199 aaPredicted RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 CDKN1AP38936 164 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 MYCNOSP40205 109 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 RPL27AP46776 148 aaKnown RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 PRRX1P54821 245 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 UBE2G1P62253 170 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 TNXAQ16473 311 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 TBR1Q16650 682 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 TMEM183BQ1AE95 376 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 DMRTC2Q8IXT2 367 aaPredicted RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 VN1R17PQ8TDU5 208 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 MBD6Q96DN6 1003 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 GRAMD2BQ96HH9 432 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 KCNS1Q96KK3 526 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 TRGV9Q99603 122 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 SSBP3Q9BWW4 388 aaPredicted RBP13.17□□□□□ -0.3
HOXD3-201ENST00000249440 ZNF586Q9NXT0 402 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 CORTO00230 105 aa13.17□□□□□ -0.3
HOXD3-201ENST00000249440 MOSP00540 346 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms