RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TMEM256-PLSCR3K7ERE1 68 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ADMP35318 185 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 HIST1H4AP62805 103 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 RBM22Q9NW64 420 aaKnown RBP eCLIP2.96□□□□□ -1.941e-6■■■■■ 27.8
SCN1A-221ENST00000641996 TECPR2O15040 1411 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 LILRA1O75019 489 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 WISP1O95388 367 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 DISP2A7MBM2 1401 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 AGLP35573 1532 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 URB2Q14146 1524 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 PPRC1Q5VV67 1664 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 RAI1Q7Z5J4 1906 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 A0A0A6YYD5 115 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TRDV1A0A1B0GX56 115 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 HGFACQ04756 655 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF146Q15072 292 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ALKAL1Q6UXT8 129 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 HS3ST2Q9Y278 367 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 HECW1Q76N89 1606 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 IGHV5-10-1A0A0J9YXX1 117 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 NDUFB3O43676 98 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TIMM17BO60830 172 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 PRB2P02812 416 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ATP1B1P05026 303 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 GNB2P62879 340 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TXNDC8Q6A555 127 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 Q6AWC8 147 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 C16orf52Q8NHV5 167 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 RTBDNQ9BSG5 229 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ANKRD36CQ5JPF3 1778 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TRAV21A0A0B4J279 112 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 A0A1B0GX51 115 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 NCR2O95944 276 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 DEFB125Q8N687 156 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 SDF2Q99470 211 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 NABP2Q9BQ15 211 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ZFAND3Q9H8U3 227 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 TRAV12-3A0A0B4J271 114 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 A6NED7 52 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 IGHG4P01861 327 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 FAM182BQ5T319 152 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 ATRNL1Q5VV63 1379 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 IGLC7A0M8Q6 106 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 C7orf66A4D0T2 115 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 J3QT63 122 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 CRYGSP22914 178 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 FOXE3Q13461 319 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 CRYGNQ8WXF5 182 aa2.96□□□□□ -1.94
SCN1A-221ENST00000641996 SNRNP40Q96DI7 357 aaKnown RBP2.96□□□□□ -1.94
SCN1A-221ENST00000641996 BTCP35070 178 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 RPL22P35268 128 aaKnown RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 LAGE3Q14657 143 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 DUOX2Q9NRD8 1548 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 NBEAL1Q6ZS30 2694 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 A0A087WWC5 75 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 CLDN17P56750 224 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 NCBP2-AS2Q69YL0 99 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 RNF166Q96A37 237 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 Q9UF83 564 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 CR1P17927 2039 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 PEAK1Q9H792 1746 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 CD7P09564 240 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 ASIPP42127 132 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 EFNB3Q15768 340 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 NDUFB6O95139 128 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 PLK5Q496M5 336 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 NMSQ5H8A3 153 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 KAZALD1Q96I82 304 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 ARHGAP23Q9P227 1491 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 PRR36Q9H6K5 1346 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 INSL3P51460 131 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 GAPTQ8N292 157 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 ZNF703Q9H7S9 590 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 ADAMTS13Q76LX8 1427 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 FRG2CA6NGY1 282 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 C11orf45Q8TAV5 145 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 DCTN5Q9BTE1 182 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 SRXN1Q9BYN0 137 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 KLK11Q9UBX7 282 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 ANAPC10Q9UM13 185 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 SRD5A1P18405 259 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 FAM53BQ14153 422 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 PMS2CLQ68D20 193 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 SPSB3Q6PJ21 355 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 CIARTQ8N365 385 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 TAF15Q92804 592 aaKnown RBP eCLIP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 AMMECR1Q9Y4X0 333 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 KDM3BQ7LBC6 1761 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 NCBP2P52298 156 aaKnown RBP eCLIP2.95□□□□□ -1.942e-9■□□□□ 10.6
SCN1A-221ENST00000641996 EFEMP1Q12805 493 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 DIAPH2-AS1Q14236 149 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 RSPO2Q6UXX9 243 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 IGF2BP2-AS1Q96M15 143 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 HDHD3Q9BSH5 251 aaPredicted RBP2.95□□□□□ -1.94
SCN1A-221ENST00000641996 DEC1Q9P2X7 70 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 FXYD1O00168 92 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 DDB2Q92466 427 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 CELA2AP08217 269 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 FAM157BP0CG42 384 aa2.95□□□□□ -1.94
SCN1A-221ENST00000641996 C9orf85Q96MD7 179 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms