RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MAGEA5P43359 124 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM141Q96I45 108 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 IDI2-AS1Q9NZ38 188 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 H3BQ85 93 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 CCL7P80098 99 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF415Q09FC8 603 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 TEX45Q8NA69 505 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 SIPA1L1O43166 1804 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 C9JQL5 133 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 IGKV3-11P04433 115 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 IGLL1P15814 213 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 MBNL2Q5VZF2 373 aaKnown RBP3.9□□□□□ -1.78
SCN1A-220ENST00000641603 C8orf86Q6ZUL3 223 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 NPFFR1Q9GZQ6 430 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 Q9H3A6 140 aa3.9□□□□□ -1.78
SCN1A-220ENST00000641603 A0A087X0K7 114 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 SS18L1O75177 396 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-220ENST00000641603 MYF5P13349 255 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 RSPO2Q6UXX9 243 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-220ENST00000641603 PLA2G3Q9NZ20 509 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 PTPRFP10586 1907 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 CD69Q07108 199 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 RNASE7Q9H1E1 156 aaKnown RBP3.9□□□□□ -1.79
SCN1A-220ENST00000641603 A0A0G2JMZ2 1700 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 LRRC37A2A6NM11 1700 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 LRRC37AA6NMS7 1700 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 SMCHD1A6NHR9 2005 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 H7C2G1 150 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 NPYP01303 97 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 PRSS53Q2L4Q9 553 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 RNF5Q99942 180 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 A0A1W2PRD5 423 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 A0A1W2PRF3 423 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 A0A1W2PRM7 423 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 F2RL2O00254 374 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 CDKN1AP38936 164 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 ETDBQ3ZM63 59 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 RRN3P1Q2M238 152 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF497Q6ZNH5 498 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 Q6ZVH6 145 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 WBP1Q96G27 269 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 PIKFYVEQ9Y2I7 2098 aa3.9□□□□□ -1.79
SCN1A-220ENST00000641603 TRAV17A0A0B4J275 112 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IGKV1-8A0A0C4DH67 115 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 CENPVL1A0A0U1RR11 272 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IFI27P40305 119 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-220ENST00000641603 SMRP1Q8NCR6 262 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PRR7Q8TB68 274 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 TMUB1Q9BVT8 246 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF319Q9P2F9 582 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 THBDP07204 575 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 TRGV9Q99603 122 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 REPIN1Q9BWE0 567 aaKnown RBP3.89□□□□□ -1.79
SCN1A-220ENST00000641603 INSIG2Q9Y5U4 225 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV1OR21-1A0A087WYE8 117 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 MEIG1Q5JSS6 88 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 FOXI2Q6ZQN5 318 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 C1orf162Q8NEQ5 155 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-220ENST00000641603 COL9A1P20849 921 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 V9GYV3 84 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 LYZL6O75951 148 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 TMEM42Q69YG0 159 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 MRAPQ8TCY5 172 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 C12orf49Q9H741 205 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PTPRZ1P23471 2315 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IQCF6A8MYZ5 107 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 C21orf140B9A014 251 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PRRG2O14669 202 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 FOXS1O43638 330 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IMUPQ9GZP8 106 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 MYMXA0A1B0GTQ4 84 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 LAMTOR5O43504 91 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IGFBP4P22692 258 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PTCRAQ6ISU1 281 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-220ENST00000641603 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.89□□□□□ -1.792e-6■■□□□ 12
SCN1A-220ENST00000641603 CEND1Q8N111 149 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 CABIN1Q9Y6J0 2220 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PRSS47A8MTI9 375 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 C12orf77C9JDV5 145 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 H0YJW9 148 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PILRBQ9UKJ0 227 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV3-43A0A0B4J1X8 118 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 PRSS46E5RG02 174 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 TCRAP04437 139 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV3-43DP0DP04 118 aa3.89□□□□□ -1.79
SCN1A-220ENST00000641603 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-220ENST00000641603 CNTFRP26992 372 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 C3AR1Q16581 482 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 MIR17HGQ75NE6 70 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 DMRTC2Q8IXT2 367 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 CRISPLD2Q9H0B8 497 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 ZIC3O60481 467 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 IGHV4-34P06331 123 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 IGFBP2P18065 325 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 CRIM1Q9NZV1 1036 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 SPTBP11277 2137 aa3.88□□□□□ -1.79
SCN1A-220ENST00000641603 VDAC2P45880 294 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-220ENST00000641603 ZNF56Q15929 161 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms