RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF785A8K8V0 405 aa14.53□□□□□ -0.08
CLN3-260ENST00000637578 CBLN1P23435 193 aa14.53□□□□□ -0.08
CLN3-260ENST00000637578 ERHP84090 104 aaKnown RBP14.53□□□□□ -0.08
CLN3-260ENST00000637578 OXA1LQ15070 435 aa14.53□□□□□ -0.08
CLN3-260ENST00000637578 OR1L6Q8NGR2 347 aa14.53□□□□□ -0.08
CLN3-260ENST00000637578 TENM3Q9P273 2699 aa14.53□□□□□ -0.08
CLN3-260ENST00000637578 C7orf66A4D0T2 115 aa14.52□□□□□ -0.08
CLN3-260ENST00000637578 GPR183P32249 361 aa14.52□□□□□ -0.08
CLN3-260ENST00000637578 IAH1Q2TAA2 248 aaPredicted RBP14.52□□□□□ -0.08
CLN3-260ENST00000637578 ZNF114Q8NC26 417 aa14.52□□□□□ -0.08
CLN3-260ENST00000637578 OR1P1Q8NH06 330 aa14.52□□□□□ -0.08
CLN3-260ENST00000637578 ZNF436Q9C0F3 470 aaPredicted RBP14.52□□□□□ -0.08
CLN3-260ENST00000637578 RBKSQ9H477 322 aa14.52□□□□□ -0.08
CLN3-260ENST00000637578 FAM25EA8MYX2 175 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 K7EIM0 57 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 OR4D5Q8NGN0 318 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 SCARB1Q8WTV0 552 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 HEYLQ9NQ87 328 aaPredicted RBP14.51□□□□□ -0.09
CLN3-260ENST00000637578 STAB2Q8WWQ8 2551 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 ZNF320A2RRD8 509 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 FAM90A26D6RGX4 464 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 F8W735 103 aaPredicted RBP14.51□□□□□ -0.09
CLN3-260ENST00000637578 TGOLN2O43493 480 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 C8orf88P0DMB2 117 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 SNCAP37840 140 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 UNQ9165/PRO28630Q6UXU0 137 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 GTSCR1Q86UQ5 136 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 ZBTB8BQ8NAP8 495 aaPredicted RBP14.51□□□□□ -0.09
CLN3-260ENST00000637578 DTD1Q8TEA8 209 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 BSCL2Q96G97 398 aaPredicted RBP14.51□□□□□ -0.09
CLN3-260ENST00000637578 MAGT1Q9H0U3 335 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 ALG5Q9Y673 324 aa14.51□□□□□ -0.09
CLN3-260ENST00000637578 C5orf51A6NDU8 294 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 RNASE2P10153 161 aaKnown RBP14.5□□□□□ -0.09
CLN3-260ENST00000637578 ELLP55199 621 aaPredicted RBP14.5□□□□□ -0.09
CLN3-260ENST00000637578 BSXQ3C1V8 233 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 SPSB3Q6PJ21 355 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 DYNLRB2Q8TF09 96 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 CACNG8Q8WXS5 425 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 TM2D3Q9BRN9 247 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 C21orf62Q9NYP8 219 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 GSKIPQ9P0R6 139 aa14.5□□□□□ -0.09
CLN3-260ENST00000637578 SSNA1O43805 119 aa14.49□□□□□ -0.09
CLN3-260ENST00000637578 HIPK2Q9H2X6 1198 aa14.49□□□□□ -0.09
CLN3-260ENST00000637578 OR2T8A6NH00 312 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 GOSR2O14653 212 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 NKX2-1P43699 371 aaPredicted RBP14.48□□□□□ -0.09
CLN3-260ENST00000637578 ID3Q02535 119 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 TM4SF20Q53R12 229 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 MARC2Q969Z3 335 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 RCHY1Q96PM5 261 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 MLXQ9UH92 298 aa14.48□□□□□ -0.09
CLN3-260ENST00000637578 I3L2K1 104 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 SYNGR2O43760 224 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 MED6O75586 246 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 SCGB1D2O95969 90 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 IAPPP10997 89 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 FCGR2BP31994 310 aaPredicted RBP14.47□□□□□ -0.09
CLN3-260ENST00000637578 ADMP35318 185 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 HTR2BP41595 481 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 SUB1P53999 127 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLN3-260ENST00000637578 GSG1LQ6UXU4 331 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 SLC24A4Q8NFF2 622 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 TMEM190Q8WZ59 177 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 MISP3Q96FF7 219 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 CHRDL1Q9BU40 450 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 MRPL27Q9P0M9 148 aaKnown RBP14.47□□□□□ -0.09
CLN3-260ENST00000637578 UFC1Q9Y3C8 167 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 IGHV3-21A0A0B4J1V1 117 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 IGHV3-35A0A0C4DH35 117 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 SIX6O95475 246 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 CTSGP08311 255 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 POLR2GP62487 172 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLN3-260ENST00000637578 PVRIGQ6DKI7 326 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 LINC00322Q6ZN03 302 aaPredicted RBP14.47□□□□□ -0.09
CLN3-260ENST00000637578 TMEM61Q8N0U2 210 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 TMEM170AQ8WVE7 144 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 WDR89Q96FK6 387 aaPredicted RBP14.47□□□□□ -0.09
CLN3-260ENST00000637578 ZNF414Q96IQ9 312 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 C2orf50Q96LR7 162 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 NEURL2Q9BR09 285 aa14.47□□□□□ -0.09
CLN3-260ENST00000637578 NDUFA4O00483 81 aa14.46□□□□□ -0.09
CLN3-260ENST00000637578 CD7P09564 240 aa14.46□□□□□ -0.09
CLN3-260ENST00000637578 CD81P60033 236 aa14.46□□□□□ -0.09
CLN3-260ENST00000637578 ZMAT4Q9H898 229 aa14.46□□□□□ -0.09
CLN3-260ENST00000637578 WRBO00258 174 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 SSSCA1O60232 199 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 IFNA10P01566 189 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 MBPP02686 304 aaPredicted RBP14.45□□□□□ -0.1
CLN3-260ENST00000637578 NPY1RP25929 384 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 HAGHQ16775 308 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 C2orf83Q53S99 150 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 PINX1Q96BK5 328 aaKnown RBP14.45□□□□□ -0.1
CLN3-260ENST00000637578 CIB3Q96Q77 187 aaPredicted RBP14.45□□□□□ -0.1
CLN3-260ENST00000637578 TXN2Q99757 166 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 GAR1Q9NY12 217 aaKnown RBP14.45□□□□□ -0.1
CLN3-260ENST00000637578 RCL1Q9Y2P8 373 aaKnown RBP14.45□□□□□ -0.1
CLN3-260ENST00000637578 U3KQ87 197 aa14.45□□□□□ -0.1
CLN3-260ENST00000637578 MT-CO2P00403 227 aa14.44□□□□□ -0.1
CLN3-260ENST00000637578 IL15RAQ13261 267 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms